IVT-seq reveals extreme bias in RNA sequencing (Q21999522)

31 August 2022

7

Angel Pizarro

Angel

Pizarro

1 reference

31 August 2022

10

Russell S Thomas

Russell S

Thomas

1 reference

31 August 2022

Katharina Hayer

4

Katharina

Hayer

1 reference

31 August 2022

Gregory R Grant

11

Gregory R

Grant

1 reference

31 August 2022

Ibrahim Halil Kavakli

object named as

Ibrahim Halil Kavakli

2

Ibrahim Halil

Kavakli

1 reference

31 August 2022

Michael B Black

5

Michael B

Black

1 reference

31 August 2022

9

Rafael Irizarry

Rafael

Irizarry

1 reference

31 August 2022

Nicholas F Lahens

1

Nicholas F

Lahens

1 reference

31 August 2022

Ray Zhang

3

Ray

Zhang

1 reference

31 August 2022

Hannah Dueck

6

Hannah

Dueck

1 reference

31 August 2022

John B Hogenesch

12

John B

Hogenesch

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2014-15-6-r86

31 August 2022

language of work or name

English

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publication date

2014

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published in

Genome Biology

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volume

15

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issue

6

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page(s)

R86

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exact match

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cites work

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Biases in Illumina transcriptome sequencing caused by random hexamer priming

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

RNA-Seq: a revolutionary tool for transcriptomics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Summarizing and correcting the GC content bias in high-throughput sequencing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

BEDTools: a flexible suite of utilities for comparing genomic features

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

MEME SUITE: tools for motif discovery and searching

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

The UCSC Genome Browser database: update 2010

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Comparative analysis of RNA sequencing methods for degraded or low-input samples

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

An update on recent methods applied for deciphering the diversity of the noncoding RNA genome structure and function

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Predicting long non-coding RNAs using RNA sequencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

RNA editing in the human ENCODE RNA-seq data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Synthetic spike-in standards for RNA-seq experiments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Sequence-specific error profile of Illumina sequencers

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Accurate quantification of transcriptome from RNA-Seq data by effective length normalization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Comprehensive comparative analysis of strand-specific RNA sequencing methods

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

The completion of the Mammalian Gene Collection (MGC).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Estimating the entropy of DNA sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

RNA-Seq: a method for comprehensive transcriptome analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

Linguistic features of noncoding DNA sequences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197826

29 November 2018

Identifiers

DOI

10.1186/GB-2014-15-6-R86

1 reference

1260527

0 references

1260527

1 reference

1 reference

1 reference