SCOP2 prototype: a new approach to protein structure mining (Q22061728)

7 February 2023

1

Antonina Andreeva

Antonina

Andreeva

1 reference

7 February 2023

4

Eugene Kulesha

Eugene

Kulesha

1 reference

7 February 2023

5

Alexey G Murzin

Alexey G

Murzin

1 reference

7 February 2023

Dave Howorth

2

Dave

Howorth

1 reference

24293656

Creative Commons Attribution 3.0 Unported

7 February 2023

language of work or name

English

0 references

publication date

January 2014

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published in

Nucleic Acids Research

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volume

42

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issue

Database issue

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page(s)

D310-4

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copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

The Pfam protein families database

1 reference

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Structural classification of proteins and structural genomics: new insights into protein folding and evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

SCOPPI: a structural classification of protein-protein interfaces

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

4SCOPmap: automated assignment of protein structures to evolutionary superfamilies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

CATH--a hierarchic classification of protein domain structures

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Protein structure comparison by alignment of distance matrices

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

SCOP: a structural classification of proteins database for the investigation of sequences and structures

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

A protein catalytic framework with an N-terminal nucleophile is capable of self-activation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

The anatomy and taxonomy of protein structure

19 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

19 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Domains in proteins: definitions, location, and structural principles

12 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

19 March 2017

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1242

Structural patterns in globular proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

The RCSB Protein Data Bank: new resources for research and education

19 March 2017

1 reference

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Data growth and its impact on the SCOP database: new developments

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Classification of proteins: available structural space for molecular modeling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

SUPERFAMILY 1.75 including a domain-centric gene ontology method

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Evolution of protein fold in the presence of functional constraints

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

SCOPEC: a database of protein catalytic domains.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

SCOP database in 2002: refinements accommodate structural genomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Fold change in evolution of protein structures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

A six-stranded double-psi beta barrel is shared by several protein superfamilies.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

How far divergent evolution goes in proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Principles that determine the structure of proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors.

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1242

QSCOP--SCOP quantified by structural relationships

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1242

Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964979

29 November 2018

Identifiers

DOI

10.1093/NAR/GKT1242

1 reference

journals/nar/AndreevaHCKM14

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_tdowarczqja7lawkhsqf6tmb4q

28 January 2021

Fatcat ID

0 references

1 reference

1 reference

24293656

1 reference