Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta (Q22065303)

6 February 2023

Joel R McNeal

1

Joel R

McNeal

1 reference

6 February 2023

Jeffrey L Boore

series ordinal

3

author given names

Jeffrey L

author last names

Boore

1 reference

6 February 2023

Claude W de Pamphilis

series ordinal

4

author given names

Claude W

author last names

de Pamphilis

1 reference

The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured

6 February 2023

language of work or name

English

0 references

publication date

2007

0 references

published in

BMC Plant Biology

0 references

volume

7

0 references

issue

1

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page(s)

57

0 references

cites work

1 reference

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Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

19 March 2017

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Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant

19 March 2017

1 reference

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Epiparasitic plants specialized on arbuscular mycorrhizal fungi

19 March 2017

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Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels

19 March 2017

1 reference

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Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

19 March 2017

1 reference

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HyPhy: hypothesis testing using phylogenies

19 March 2017

1 reference

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Automatic annotation of organellar genomes with DOGMA

24 March 2017

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Nuclear-encoded proteins target to the plastid in Toxoplasma gondii and Plasmodium falciparum

7 April 2017

1 reference

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A structural, functional and molecular analysis of plastids of the holoparasites Cuscuta reflexa and Cuscuta europaea

28 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Monophyly of the Convolvulaceae and circumscription of their major lineages based on DNA sequences of multiple chloroplast loci

12 September 2017

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Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae).

12 September 2017

1 reference

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Using partial genomic fosmid libraries for sequencing complete organellar genomes.

12 September 2017

1 reference

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Why are plastid genomes retained in non-photosynthetic organisms?

12 September 2017

1 reference

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Multiple metabolic roles for the nonphotosynthetic plastid of the green alga Prototheca wickerhamii.

12 September 2017

1 reference

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Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Testing the phylogenetic position of a parasitic plant (Cuscuta, Convolvulaceae, asteridae): Bayesian inference and the parametric bootstrap on data drawn from three genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

The Plastid Chromosome of Atropa belladonna and its Comparison with that of Nicotiana tabacum: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Unusual carotenoid composition and a new type of xanthophyll cycle in plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

GCUA: general codon usage analysis

12 September 2017

1 reference

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Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Comparative organization of chloroplast genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Plastid translation and transcription genes in a non-photosynthetic plant: intact, missing and pseudo genes

27 September 2017

1 reference

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Down the slippery slope: plastid genome evolution in Convolvulaceae

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

A subset of conserved tRNA genes in plastid DNA of nongreen plants.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnI) and an ORF 2280 homologue

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Organization and sequence of photosynthetic genes from the plastid genome of the holoparasitic flowering plant Cuscuta reflexa

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Loss of transfer RNA genes from the plastid 16S-23S ribosomal RNA gene spacer in a parasitic plant

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Methods for obtaining and analyzing whole chloroplast genome sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

The rbcL genes of two Cuscuta species, C. gronovii and C. subinclusa, are transcribed by the nuclear-encoded plastid RNA polymerase (NEP).

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

The plastid clpP1 protease gene is essential for plant development

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Plastid transcription in the holoparasitic plant genus Cuscuta: parallel loss of the rrn16 PEP-promoter and of the rpoA and rpoB genes coding for the plastid-encoded RNA polymerase.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Power analysis of tests for loss of selective constraint in cave crayfish and nonphotosynthetic plant lineages

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Extreme specificity in epiparasitic Monotropoideae (Ericaceae): widespread phylogenetic and geographical structure

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Complete gene map of the plastid genome of the nonphotosynthetic euglenoid flagellate Astasia longa

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Structural analyses of plastid-derived 16S rRNAs in holoparasitic angiosperms

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Do nonasterid holoparasitic flowering plants have plastid genomes?

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Divergent evolution of two plastid genes, rbcL and atpB, in a non-photosynthetic parasitic plant

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2216012

Gene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?

29 November 2018

1 reference

12 December 2020

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

1 reference

12 December 2020

Plastid genome structure and loss of photosynthetic ability in the parasitic genus Cuscuta

1 reference

12 December 2020

Molecular, functional and ultrastructural characterisation of plastids from six species of the parasitic flowering plant genus Cuscuta

1 reference

12 December 2020

Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant

1 reference

12 December 2020

The genes encoding subunits of ATP synthase are conserved in the reduced plastid genome of the heterotrophic alga Prototheca wickerhamii

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2229-7-57

1 reference

0 references

1 reference

1 reference

PubMed publication ID

17956636

1 reference