Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins (Q22066277)

22 June 2017

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins (English)

1 reference

Methanobrevibacter smithii

22 June 2017

object named as

Methanobrevibacter smithii

1 reference

Rob Knight

12

Rob

Knight

1 reference

7 February 2023

Catherine A. Lozupone

2

Catherine A Lozupone

Catherine A

Lozupone

1 reference

22 June 2017

11

Andrew C Heath

Andrew C

Heath

1 reference

22 June 2017

13

Jeffrey I Gordon

Jeffrey I

Gordon

1 reference

22 June 2017

3

Federico E Rey

Federico E

Rey

1 reference

22 June 2017

Elizabeth E Hansen

1

Elizabeth E

Hansen

1 reference

22 June 2017

Meng Wu

4

Meng

Wu

1 reference

22 June 2017

Janaki L Guruge

5

Janaki L

Guruge

1 reference

22 June 2017

Aneesha Narra

6

Aneesha

Narra

1 reference

22 June 2017

Jonathan Goodfellow

7

Jonathan

Goodfellow

1 reference

22 June 2017

Jesse R Zaneveld

8

Jesse R

Zaneveld

1 reference

22 June 2017

Daniel T McDonald

9

Daniel T

McDonald

1 reference

22 June 2017

Julia A Goodrich

10

Julia A

Goodrich

1 reference

22 June 2017

language of work or name

English

0 references

publication date

11 February 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

22 June 2017

1 reference

22 June 2017

108 Suppl 1

1 reference

22 June 2017

4599-4606

1 reference

QIIME allows analysis of high-throughput community sequencing data

22 June 2017

Supplement_1

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

A human gut microbial gene catalogue established by metagenomic sequencing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

A core gut microbiome in obese and lean twins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Diversity of the human intestinal microbial flora

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Search and clustering orders of magnitude faster than BLAST

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Bacterial community variation in human body habitats across space and time

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Mauve: multiple alignment of conserved genomic sequence with rearrangements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

ARB: a software environment for sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Human gut microbiota in obesity and after gastric bypass

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Viruses in the faecal microbiota of monozygotic twins and their mothers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Accurate determination of microbial diversity from 454 pyrosequencing data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Innovations in host and microbial sialic acid biosynthesis revealed by phylogenomic prediction of nonulosonic acid structure

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Large-scale reconstruction and phylogenetic analysis of metabolic environments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

12 September 2017

Old acetogens, new light

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Recent developments in the mechanistic enzymology of the ATP-dependent Lon protease from Escherichia coli: highlights from kinetic studies

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Stability of human methanogenic flora over 35 years and a review of insights obtained from breath methane measurements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Path concentration distribution of toluene using remote sensing FTIR and one-dimensional reconstruction method

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Characterization of culturable anaerobic bacteria from the forestomach of an eastern grey kangaroo, Macropus giganteus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Shared and unique environmental factors determine the ecology of methanogens in humans and rats

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Studies on breath methane: the effect of ethnic origins and lactulose

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The contribution of the large intestine to energy supplies in man

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Factors influencing pulmonary methane excretion in man. An indirect method of studying the in situ metabolism of the methane-producing colonic bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

The HtrA (DegP) protein, essential for Escherichia coli survival at high temperatures, is an endopeptidase

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Phylogenetic analysis reveals multiple lateral transfers of adenosine-5'-phosphosulfate reductase genes among sulfate-reducing microorganisms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Methanogenic flora is associated with altered colonic transit but not stool characteristics in constipation without IBS

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3063581

Methane, a gas produced by enteric bacteria, slows intestinal transit and augments small intestinal contractile activity.

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000071108

Evolution of the syntrophic interaction between Desulfovibrio vulgaris and Methanosarcina barkeri: Involvement of an ancient horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000071108

Carriage, quantification, and predominance of methanogens and sulfate-reducing bacteria in faecal samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000071108

Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000071108

Isolation and Characterization of Sporobacter termitidis gen. nov., sp. nov., from the Digestive Tract of the Wood-Feeding Termite Nasutitermes lujae

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000071108

Molecular characterization and hydrogen production of a new species of anaerobe

21 January 2018

1 reference

12 December 2020

Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism

1 reference

12 December 2020

FECAL METHANOGENS AND VERTEBRATE EVOLUTION.

1 reference

12 December 2020

Volume and composition of human intestinal gas determined by means of an intestinal washout technic

1 reference

12 December 2020

Interactions of microbial populations in cellulose fermentation

1 reference

12 December 2020

Intestinal methanogenesis in primates--a genetic and evolutionary approach

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1000071108

1 reference

release_ulb3j7tzwngo7oyjtpkxwt5df4

22 June 2017

0 references

0 references

OpenCitations bibliographic resource ID

533870

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference