The Amphimedon queenslandica genome and the evolution of animal complexity (Q22122176)

6 February 2023

31

Gerard Manning

Gerard

Manning

1 reference

6 February 2023

Andrew Calcino

21

Andrew

Calcino

1 reference

6 February 2023

Michael Dacre

9

Michael

Dacre

1 reference

6 February 2023

Claire Larroux

11

Claire

Larroux

1 reference

6 February 2023

Oleg Simakov

2

Oleg

Simakov

1 reference

6 February 2023

Nicholas H Putnam

12

Nicholas H.

Putnam

1 reference

6 February 2023

Sandie M Degnan

16

Sandie M.

Degnan

1 reference

6 February 2023

Todd H Oakley

17

Todd H.

Oakley

1 reference

6 February 2023

Aaron Darling

15

Aaron

Darling

1 reference

6 February 2023

Daniel S Rokhsar

33

Daniel S.

Rokhsar

1 reference

6 February 2023

Ben J Woodcroft

28

Ben J.

Woodcroft

1 reference

6 February 2023

Scott F Cummins

22

Scott F.

Cummins

1 reference

6 February 2023

18

David C Plachetzki

David C.

Plachetzki

1 reference

6 February 2023

30

Kenneth S Kosik

Kenneth S.

Kosik

1 reference

6 February 2023

3

Jarrod Chapman

Jarrod

Chapman

1 reference

6 February 2023

26

Sally P Leys

Sally P.

Leys

1 reference

6 February 2023

6

Therese

Mitros

Therese Mitros

1 reference

6 February 2023

13

Mario

Stanke

Mario Stanke

1 reference

6 February 2023

27

Shengqiang

Shu

Shengqiang Shu

1 reference

6 February 2023

23

David M.

Goodstein

David M Goodstein

1 reference

6 February 2023

8

Cecilia Conaco

Cecilia

Conaco

1 reference

6 February 2023

Mansi Srivastava

1

Mansi

Srivastava

1 reference

6 February 2023

Bryony Fahey

4

Bryony

Fahey

1 reference

6 February 2023

Marie E A Gauthier

5

Marie E. A.

Gauthier

1 reference

6 February 2023

Gemma S Richards

7

Gemma S.

Richards

1 reference

6 February 2023

Maja Adamska

14

Maja

Adamska

1 reference

6 February 2023

Yufeng Zhai

19

Yufeng

Zhai

1 reference

6 February 2023

Marcin Adamski

20

Marcin

Adamski

1 reference

6 February 2023

Christina Harris

24

Christina

Harris

1 reference

6 February 2023

Daniel J Jackson

25

Daniel J.

Jackson

1 reference

6 February 2023

Michel Vervoort

29

Michel

Vervoort

1 reference

6 February 2023

Bernard M Degnan

32

Bernard M.

Degnan

1 reference

full work available at URL

6 February 2023

language of work or name

English

0 references

publication date

5 August 2010

0 references

https://www.nature.com/articles/nature09201.pdf

0 references

published in

Nature

0 references

volume

466

0 references

issue

7307

0 references

page(s)

720-6

0 references

copyright license

Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

start time

1 August 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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19 March 2017

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Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning

19 March 2017

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19 March 2017

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19 March 2017

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The Hallmarks of Cancer

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

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The Trichoplax genome and the nature of placozoans

19 March 2017

1 reference

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The amphioxus genome and the evolution of the chordate karyotype

19 March 2017

1 reference

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Broad phylogenomic sampling improves resolution of the animal tree of life

19 March 2017

1 reference

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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

19 March 2017

1 reference

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

19 March 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

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MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

19 March 2017

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

19 March 2017

1 reference

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

19 March 2017

1 reference

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Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

19 March 2017

1 reference

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The evolutionary origin of hedgehog proteins

19 March 2017

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Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

19 March 2017

1 reference

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Early evolution of animal cell signaling and adhesion genes

19 March 2017

1 reference

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Late Precambrian bilaterians: grades and clades

19 March 2017

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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

19 March 2017

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A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

7 April 2017

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PANTHER: a library of protein families and subfamilies indexed by function

7 April 2017

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CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

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7 April 2017

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Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

12 September 2017

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Early evolution of the LIM homeobox gene family.

7 April 2017

1 reference

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Demosponge and sea anemone fibrillar collagen diversity reveals the early emergence of A/C clades and the maintenance of the modular structure of type V/XI collagens from sponge to human

12 September 2017

1 reference

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The protist, Monosiga brevicollis, has a tyrosine kinase signaling network more elaborate and diverse than found in any known metazoan

12 September 2017

1 reference

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The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus

12 September 2017

1 reference

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Innate immune defense of the sponge Suberites domuncula against bacteria involves a MyD88-dependent signaling pathway. Induction of a perforin-like molecule

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Bauplan of urmetazoa: basis for genetic complexity of metazoa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Circular proteoglycans from sponges: first members of the spongican family

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Cadherins in embryonic and neural morphogenesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Computational inference of homologous gene structures in the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Characterization of the receptor protein-tyrosine kinase gene from the marine sponge Geodia cydonium.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Sponge homologs of vertebrate protein tyrosine kinases and frequent domain shufflings in the early evolution of animals before the parazoan-eumetazoan split

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Origin of insulin receptor-like tyrosine kinases in marine sponges.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Origin of metazoan adhesion molecules and adhesion receptors as deduced from cDNA analyses in the marine sponge Geodia cydonium: a review

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE09201

The Demosponge Amphimedon queenslandica: Reconstructing the Ancestral Metazoan Genome and Deciphering the Origin of Animal Multicellularity

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Multiple dicer genes in the early-diverging metazoa

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Multi-component complement system of Cnidaria: C3, Bf, and MASP genes expressed in the endodermal tissues of a sea anemone, Nematostella vectensis

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

NK homeobox genes with choanocyte-specific expression in homoscleromorph sponges.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Sponge genes provide new insight into the evolutionary origin of the neurogenic circuit.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Genesis and expansion of metazoan transcription factor gene classes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

The premetazoan ancestry of cadherins.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

A high percentage of introns in human genes were present early in animal evolution: evidence from the basal metazoan Nematostella vectensis.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

The NK homeobox gene cluster predates the origin of Hox genes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Cytological Basis of Photoresponsive Behavior in a Sponge Larva

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Type IV collagen in sponges, the missing link in basement membrane ubiquity.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

The zootype and the phylotypic stage.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3130542

Origin of the metazoan immune system: identification of the molecules and their functions in sponges

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20686567

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ancient origin of the integrin-mediated adhesion and signaling machinery

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE09201

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE09201

1 reference

1043569

0 references

1043569

1 reference

1 reference

1 reference