Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae) (Q22162487)

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English	Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)	scientific article

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Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae) (English)

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object named as

Chloranthaceae

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object named as

Dioscoreaceae

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object named as

Buxaceae

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Schisandraceae

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Robert K. Jansen

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object named as

Robert K Jansen

author given names

Robert K

author last names

Jansen

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7 February 2023

author name string

Debra R. Hansen

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author given names

Debra R

author last names

Hansen

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7 February 2023

Sayantani G. Dastidar

2

author given names

Sayantani G

author last names

Dastidar

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7 February 2023

Zhengqiu Cai

3

author given names

Zhengqiu

author last names

Cai

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7 February 2023

Cynthia Penaflor

4

author given names

Cynthia

author last names

Penaflor

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7 February 2023

Jennifer V. Kuehl

5

author given names

Jennifer V

author last names

Kuehl

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7 February 2023

Jeffrey L. Boore

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author given names

Jeffrey L

author last names

Boore

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7 February 2023

language of work or name

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publication date

November 2007

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number of pages

17

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Molecular Phylogenetics and Evolution

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45

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547-563

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1 reference

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1 reference

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1 reference

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