Interchromosomal association and gene regulation in trans (Q22162506)

Charalampos G. Spilianakis

Europe PubMed Central

title

Interchromosomal association and gene regulation in trans (English)

0 references

author

series ordinal

2

object named as

Charalampos G Spilianakis

author given names

Charalampos G

author last names

Spilianakis

1 reference

7 February 2023

3

Richard A

Flavell

Richard A Flavell

1 reference

7 February 2023

Adam Williams

1

Adam

Williams

1 reference

7 February 2023

language of work or name

English

0 references

publication date

April 2010

0 references

published in

Trends in Genetics

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volume

26

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issue

4

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page(s)

188-97

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cites work

CTCF: master weaver of the genome

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CTCF physically links cohesin to chromatin

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The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions

19 March 2017

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

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CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2

19 March 2017

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Common themes and cell type specific variations of higher order chromatin arrangements in the mouse

19 March 2017

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CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin

19 March 2017

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Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes

19 March 2017

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Interchromosomal associations between alternatively expressed loci

19 March 2017

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High-resolution profiling of histone methylations in the human genome

19 March 2017

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

19 March 2017

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Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development

19 March 2017

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Interchromosomal interactions and olfactory receptor choice

19 March 2017

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Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

19 March 2017

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CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

19 March 2017

1 reference

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A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

19 March 2017

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Looping and interaction between hypersensitive sites in the active beta-globin locus

19 March 2017

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Transvection effects in Drosophila

19 March 2017

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Capturing chromosome conformation

19 March 2017

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CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

19 March 2017

1 reference

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

19 March 2017

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Cohesins functionally associate with CTCF on mammalian chromosome arms

7 April 2017

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

7 April 2017

1 reference

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Genome-wide analysis of estrogen receptor binding sites

7 April 2017

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Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

7 April 2017

1 reference

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CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus

12 September 2017

1 reference

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Genomic interactions: chromatin loops and gene meeting points in transcriptional regulation.

12 September 2017

1 reference

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The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Genetic imprinting: the paradigm of Prader-Willi and Angelman syndromes

12 September 2017

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Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Silencing and nuclear repositioning of the lambda5 gene locus at the pre-B cell stage requires Aiolos and OBF-1.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Association between active genes occurs at nuclear speckles and is modulated by chromatin environment

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

12 September 2017

1 reference

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12 September 2017

1 reference

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Recruitment to the nuclear periphery can alter expression of genes in human cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Beta-globin regulation and long-range interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Actin-dependent intranuclear repositioning of an active gene locus in vivo.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Inter-chromosomal gene regulation in the mammalian cell nucleus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Maintenance of imprinting and nuclear architecture in cycling cells

12 September 2017

1 reference

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Xist function: bridging chromatin and stem cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Whole-genome cartography of estrogen receptor alpha binding sites

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Evolutionarily conserved, cell type and species-specific higher order chromatin arrangements in interphase nuclei of primates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Long-range directional movement of an interphase chromosome site

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

The Mcp element mediates stable long-range chromosome-chromosome interactions in Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Coregulated human globin genes are frequently in spatial proximity when active

12 September 2017

1 reference

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Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Actin and myosin I in the nucleus: what next?

12 September 2017

1 reference

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Heterochromatin structure and function

12 September 2017

1 reference

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Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro

12 September 2017

1 reference

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Active genes dynamically colocalize to shared sites of ongoing transcription

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Long-range chromatin regulatory interactions in vivo

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

The concept of self-organization in cellular architecture

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.

12 September 2017

1 reference

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Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain

12 September 2017

1 reference

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Differences in the localization and morphology of chromosomes in the human nucleus.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Rabl's model of the interphase chromosome arrangement tested in Chinese hamster cells by premature chromosome condensation and laser-UV-microbeam experiments

12 September 2017

1 reference

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Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators

27 September 2017

1 reference

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Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic.

27 September 2017

1 reference

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Transient homologous chromosome pairing marks the onset of X inactivation

27 September 2017

1 reference

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Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Regulation of X-chromosome counting by Tsix and Xite sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Inter- and intra-specific gene-density-correlated radial chromosome territory arrangements are conserved in Old World monkeys

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

GAGA can mediate enhancer function in trans by linking two separate DNA molecules

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

A conserved insulator that recruits CTCF and cohesin exists between the closely related but divergently regulated interleukin-3 and granulocyte-macrophage colony-stimulating factor genes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Cutting edge: developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Gene associations: true romance or chance meeting in a nuclear neighborhood?

30 May 2018

1 reference

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How genes find their way inside the cell nucleus

30 May 2018

1 reference

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In vivo visualization of chromosomes using lac operator-repressor binding

30 May 2018

1 reference

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Locus control regions: overcoming heterochromatin-induced gene inactivation in mammals

30 May 2018

1 reference

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Transactivation of the Xenopus rRNA gene promoter by its enhancer

30 May 2018

1 reference

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An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.

30 May 2018

1 reference

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The nuclear organization of Polycomb/Trithorax group response elements in larval tissues of Drosophila melanogaster

29 November 2018

1 reference

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Transcriptional repression mediated by repositioning of genes to the nuclear lamina

29 November 2018

1 reference

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Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Chromatin motion is constrained by association with nuclear compartments in human cells.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865229

Local and cis effects of the H element on expression of odorant receptor genes in mouse

29 November 2018

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12 December 2020

Chromosome territory positioning of conserved homologous chromosomes in different primate species

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12 December 2020

Non-random radial arrangements of interphase chromosome territories: evolutionary considerations and functional implications

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12 December 2020

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Transcription against an applied force

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12 December 2020

Homologous association of oppositely imprinted chromosomal domains

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12 December 2020

Position effect in human genetic disease

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12 December 2020

10.1016/J.TIG.2010.01.007

Identifiers

DOI

1 reference

release_r6x37qehebh6rhfpqqonfcfxiy

1839717

Fatcat ID

0 references

1839717

1 reference

1 reference

1 reference