Structural basis for human PHF2 Jumonji domain interaction with metal ions (Q24317409)

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18 January 2020

title

Structural basis for human PHF2 Jumonji domain interaction with metal ions (English)

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18 January 2020

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GOA release 2020-03-11

histone demethylase activity

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GOA release 2020-03-11

author

John R Horton

1

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18 January 2020

Hideharu Hashimoto

3

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18 January 2020

author name string

Anup K Upadhyay

2

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18 January 2020

Xing Zhang

4

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18 January 2020

Xiaodong Cheng

5

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18 January 2020

language of work or name

English

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publication date

15 December 2010

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Journal of Molecular Biology

18 January 2020

published in

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18 January 2020

volume

406

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18 January 2020

issue

1

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18 January 2020

page(s)

1-8

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Interaction of JMJD6 with single-stranded RNA

18 January 2020

cites work

1 reference

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PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression

19 March 2017

1 reference

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Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development

19 March 2017

1 reference

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A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation

19 March 2017

1 reference

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PHF8 activates transcription of rRNA genes through H3K4me3 binding and H3K9me1/2 demethylation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

JMJD6 is a histone arginine demethylase

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Structure of factor-inhibiting hypoxia-inducible factor (HIF) reveals mechanism of oxidative modification of HIF-1 alpha

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Histone demethylation by a family of JmjC domain-containing proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

PHF2, a novel PHD finger gene located on human chromosome 9q22

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

JmjC-domain-containing proteins and histone demethylation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

PHF8 targets histone methylation and RNA polymerase II to activate transcription.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Dual-specificity histone demethylase KIAA1718 (KDM7A) regulates neural differentiation through FGF4.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Alterations in candidate genes PHF2, FANCC, PTCH1 and XPA at chromosomal 9q22.3 region: pathological significance in early- and late-onset breast carcinoma

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

JHDM1B/FBXL10 is a nucleolar protein that represses transcription of ribosomal RNA genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Methylation: lost in hydroxylation?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

A novel jmjC domain protein modulates heterochromatization in fission yeast

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

KIAA1718 is a histone demethylase that erases repressive histone methyl marks.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030633

Crystal Structure of the 2-Oxoglutarate- and Fe(II)-Dependent Lysyl Hydroxylase JMJD6

29 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.JMB.2010.12.013

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/J.JMB.2010.12.013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21167174%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

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18 January 2020

PubMed publication ID

21167174

1 reference