Characterization of cis- and trans-acting elements in the imprinted human SNURF-SNRPN locus (Q24535658)

4 July 2017

Characterization of cis- and trans-acting elements in the imprinted human SNURF-SNRPN locus (English)

1 reference

4 July 2017

Sara Rodriguez-Jato

1

1 reference

4 July 2017

Robert D Nicholls

series ordinal

2

1 reference

4 July 2017

Daniel J Driscoll

series ordinal

3

1 reference

4 July 2017

Thomas P Yang

series ordinal

4

1 reference

4 July 2017

language of work or name

English

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publication date

22 August 2005

1 reference

4 July 2017

Nucleic Acids Research

1 reference

4 July 2017

33

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4 July 2017

15

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4 July 2017

4740-4753

1 reference

The imprinting mechanism of the Prader-Willi/Angelman regional control center

4 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

An imprinted, mammalian bicistronic transcript encodes two independent proteins

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Gene structure, DNA methylation, and imprinted expression of the human SNRPN gene

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

The gene encoding the small nuclear ribonucleoprotein-associated protein N is expressed at high levels in neurons

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

A common set of gene regulatory networks links metabolism and growth inhibition

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

CTCF, a candidate trans-acting factor for X-inactivation choice

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Parent-specific complementary patterns of histone H3 lysine 9 and H3 lysine 4 methylation at the Prader-Willi syndrome imprinting center

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key?

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

A mouse model for Prader-Willi syndrome imprinting-centre mutations

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Imprint switching on human chromosome 15 may involve alternative transcripts of the SNRPN gene

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Deletions of a differentially methylated CpG island at the SNRPN gene define a putative imprinting control region

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Active genes dynamically colocalize to shared sites of ongoing transcription

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Genomic imprinting: CTCF protects the boundaries

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Control elements within the PWS/AS imprinting box and their function in the imprinting process

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Spatial organization of gene expression: the active chromatin hub.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

p300/CBP-associated factor (P/CAF) interacts with nuclear respiratory factor-1 to regulate the UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-3 gene

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Characterization of the human Snrpn minimal promoter and cis elements within it.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Chromatin remodeling and extragenic transcription at the MHC class II locus control region.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Regulation of the activity of Sp1-related transcription factors.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

The genetics of the E2F family of transcription factors: shared functions and unique roles

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

The mouse Snrpn minimal promoter and its human orthologue: activity and imprinting

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Genome organization, function, and imprinting in Prader-Willi and Angelman syndromes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Nucleosomes are translationally positioned on the active allele and rotationally positioned on the inactive allele of the HPRT promoter.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

CTCF-binding sites flank CTG/CAG repeats and form a methylation-sensitive insulator at the DM1 locus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Reconstitution of human beta-globin locus control region hypersensitive sites in the absence of chromatin assembly.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Methylated DNA sequences in genomic imprinting.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

De novo deletions of SNRPN exon 1 in early human and mouse embryos result in a paternal to maternal imprint switch

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Parent-of-origin specific histone acetylation and reactivation of a key imprinted gene locus in Prader-Willi syndrome.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Mechanisms of genomic imprinting

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

In vivo nuclease hypersensitivity studies reveal multiple sites of parental origin-dependent differential chromatin conformation in the 150 kb SNRPN transcription unit

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Imprinting-mutation mechanisms in Prader-Willi syndrome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Identification of YY1 sequences necessary for association with the nuclear matrix and for transcriptional repression functions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Sequencing and functional analysis of the SNRPN promoter: in vitro methylation abolishes promoter activity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

In vivo footprinting and genomic sequencing by ligation-mediated PCR.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Resting metabolic rate, plasma leptin concentrations, leptin receptor expression, and adipose tissue measured by whole-body magnetic resonance imaging in women with Prader-Willi syndrome.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

The human glucocorticoid receptor promoter upstream sequences contain binding sites for the ubiquitous transcription factor, Yin Yang 1.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1188517

Maternal methylation imprints on human chromosome 15 are established during or after fertilization.

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKI786

Imprinting in Prader-Willi and Angelman syndromes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKI786

The SNRPN promoter is not required for genomic imprinting of the Prader-Willi/Angelman domain in mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKI786

Differences in the chromatin structure and cis-element organization of the human and mouse GATA1 loci: implications for cis-element identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKI786

Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKI786

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKI786

Establishing the epigenetic status of the Prader-Willi/Angelman imprinting center in the gametes and embryo

21 January 2018

1 reference

12 December 2020

Chromatin modification of the human imprinted NDN (necdin) gene detected by in vivo footprinting

1 reference

12 December 2020

A 5-kb imprinting center deletion in a family with Angelman syndrome reduces the shortest region of deletion overlap to 880 bp

1 reference

12 December 2020

The imprinting box of the Prader-Willi/Angelman syndrome domain

1 reference

12 December 2020

Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI786

1 reference

release_psoxvb3qknhajckpykt436gfky

4 July 2017

0 references

PMCID

1188517

1 reference

4 July 2017

1 reference