The catalytic domain of RNase E shows inherent 3' to 5' directionality in cleavage site selection (Q24538219)

6 July 2017

title

The catalytic domain of RNase E shows inherent 3' to 5' directionality in cleavage site selection (English)

1 reference

6 July 2017

Yanan Feng

1

1 reference

6 July 2017

Timothy A Vickers

series ordinal

2

1 reference

6 July 2017

Stanley N Cohen

series ordinal

3

1 reference

6 July 2017

language of work or name

English

0 references

publication date

4 November 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

6 July 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

6 July 2017

volume

99

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6 July 2017

issue

23

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6 July 2017

page(s)

14746-14751

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Emerging features of mRNA decay in bacteria

6 July 2017

cites work

1 reference

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Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

24 March 2017

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RNase E activity is conferred by a single polypeptide: overexpression, purification, and properties of the ams/rne/hmp1 gene product

24 March 2017

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The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates

24 March 2017

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24 March 2017

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The global regulator RNase III modulates translation repression by the transcription elongation factor N

24 March 2017

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Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E.

27 September 2017

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27 September 2017

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Preferential cleavage of degradative intermediates of rpsT mRNA by the Escherichia coli RNA degradosome

27 September 2017

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One- and three-dimensional pathways for proteins to reach specific DNA sites

27 September 2017

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Unpaired terminal nucleotides and 5' monophosphorylation govern 3' polyadenylation by Escherichia coli poly(A) polymerase I.

27 September 2017

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Xeroderma pigmentosum complementation group A protein acts as a processivity factor

27 September 2017

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Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding

27 September 2017

1 reference

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Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

27 September 2017

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Roles of polyadenylation and nucleolytic cleavage in the filamentous phage mRNA processing and decay pathways in Escherichia coli

27 September 2017

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RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

27 September 2017

1 reference

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Ribonuclease E is a 5'-end-dependent endonuclease

27 September 2017

1 reference

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The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly

27 September 2017

1 reference

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Role of specific amino acid residues in T4 endonuclease V that alter nontarget DNA binding

27 September 2017

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A processive versus a distributive mechanism of action correlates with differences in ability of normal and xeroderma pigmentosum group A endonucleases to incise damaged nucleosomal DNA.

27 September 2017

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Proteins associated with RNase E in a multicomponent ribonucleolytic complex

27 September 2017

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The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus

27 September 2017

1 reference

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Influence of translational efficiency on the stability of the mRNA for ribosomal protein S20 in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase E.

27 September 2017

1 reference

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Characterization of fully 2'-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity

27 September 2017

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Polyadenylylation helps regulate mRNA decay in Escherichia coli.

27 September 2017

1 reference

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Decay of mRNA in Escherichia coli: investigation of the fate of specific segments of transcripts

27 September 2017

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The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli

27 September 2017

1 reference

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Specificity of Escherichia coli endoribonuclease RNase E: in vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site.

27 September 2017

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Reverse transcriptase from human immunodeficiency virus: a single template-primer binding site serves two physically separable catalytic functions

27 September 2017

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Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli

27 September 2017

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Multiple pathways for primary processing of ribosomal RNA in Escherichia coli

27 September 2017

1 reference

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A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA

27 September 2017

1 reference

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RNase E: still a wonderfully mysterious enzyme.

27 September 2017

1 reference

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RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation

30 May 2018

1 reference

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A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro

30 May 2018

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A poly(A) polymerase from calf thymus. Characterization of the reaction product and the primer requirement

30 May 2018

1 reference

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Escherichia coli RNase E has a role in the decay of bacteriophage T4 mRNA.

30 May 2018

1 reference

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Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same

30 May 2018

1 reference

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Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5' and 3' extremities of the primary transcript.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137490

Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid.

30 May 2018

1 reference

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The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo

30 May 2018

1 reference

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Control of RNase E-mediated RNA degradation by 5'-terminal base pairing in E. coli

30 May 2018

1 reference

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Poly(A)- and poly(U)-specific RNA 3' tail shortening by E. coli ribonuclease E.

30 May 2018

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Functional relationship between Escherichia coli RNase E and the CafA protein.

21 January 2018

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Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli

21 January 2018

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Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops

21 January 2018

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Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

21 January 2018

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

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Modulation of the activity of RNase E in vitro by RNA sequences and secondary structures 5' to cleavage sites.

21 January 2018

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Structural Determinants of Enzymic Processivity

21 January 2018

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Extending the Limits to Enzymatic Catalysis: Diffusion of Ribonuclease A in One Dimension†

21 January 2018

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The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene

21 January 2018

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Degradation of mRNA in Escherichia coli: an old problem with some new twists

21 January 2018

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Stabilization of circular rpsT mRNA demonstrates the 5'-end dependence of RNase E action in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.202590899

In the absence of translation, RNase E can bypass 5' mRNA stabilizers in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.202590899

Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.202590899

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

21 January 2018

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RNase E cleaves at multiple sites in bubble regions of RNA I stem loops yielding products that dissociate differentially from the enzyme

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.202590899

Human apurinic/apyrimidinic endonuclease is processive

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.202590899

Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3' stabilizing stem and loop structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.202590899

The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12417756

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modulation of the DNA scanning activity of the Micrococcus luteus UV endonuclease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12417756

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.202590899

1 reference

6 July 2017

0 references

1 reference

6 July 2017

1 reference