Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes (Q24545644)

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27 December 2019

title

Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes (English)

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27 December 2019

0 references

1 reference

1

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27 December 2019

Carlos M Vicient

2

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27 December 2019

Alan H. Schulman

6

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27 December 2019

author name string

Ofer Peleg

3

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27 December 2019

Kesara Anamthawat-Jonsson

4

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27 December 2019

Alexander Bolshoy

5

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27 December 2019

language of work or name

English

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publication date

1 March 2004

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27 December 2019

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27 December 2019

volume

166

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27 December 2019

issue

3

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27 December 2019

page(s)

1437-1450

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

27 December 2019

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7 April 2017

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7 April 2017

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7 April 2017

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27 September 2017

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27 September 2017

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A high-density cytogenetic map of the Aegilops tauschii genome incorporating retrotransposons and defense-related genes: insights into cereal chromosome structure and function.

27 September 2017

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Sequence organization of barley centromeres

27 September 2017

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Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes

27 September 2017

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Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

27 September 2017

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In vitro analysis of human immunodeficiency virus type 1 minus-strand strong-stop DNA synthesis and genomic RNA processing.

27 September 2017

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The human endogenous retrovirus K Rev response element coincides with a predicted RNA folding region

27 September 2017

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Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley

27 September 2017

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A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

27 September 2017

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Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

27 September 2017

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27 September 2017

Plant retrotransposons

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Phylogenetic analysis of the Triticeae (Poaceae) based on rpoA sequence data.

27 September 2017

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Nested retrotransposons in the intergenic regions of the maize genome

27 September 2017

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Sequence variability within the tobacco retrotransposon Tnt1 population.

27 September 2017

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Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences

27 September 2017

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27 September 2017

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tRNAs as primer of reverse transcriptases

27 September 2017

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An indicator gene to demonstrate intracellular transposition of defective retroviruses

27 September 2017

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Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants

27 September 2017

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27 September 2017

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Identification and characterization of novel retrotransposons of the gypsy type in rice

27 September 2017

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The core domain of retrotransposon integrase in Hordeum: predicted structure and evolution.

30 May 2018

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Gypsy-like retrotransposons are widespread in the plant kingdom.

30 May 2018

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BARE-1 insertion site preferences and evolutionary conservation of RNA and cDNA processing sites

30 May 2018

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Phylogenetic analysis of a retrotransposon with implications for strong evolutionary constraints on reverse transcriptase

30 May 2018

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Molecular analysis of a putative transposable retroelement from the Zea genus with internal clusters of tandem repeats

30 May 2018

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17 Predicting optimal and suboptimal secondary structure for RNA

30 May 2018

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RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene

30 May 2018

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Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

28 November 2018

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Analysis of plus-strand primer selection, removal, and reutilization by retroviral reverse transcriptases.

28 November 2018

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Retrotransposon BARE-1 is a major, dispersed component of the barley (Hordeum vulgare L.) genome

28 November 2018

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RNA multi-structure landscapes. A study based on temperature dependent partition functions.

28 November 2018

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Role of RNA primers in initiation of minus-strand and plus-strand DNA synthesis of the yeast retrotransposon Ty1

28 November 2018

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12 December 2020

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

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12 December 2020

Active retrotransposons are a common feature of grass genomes

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12 December 2020

Prediction of RNA secondary structure by energy minimization

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12 December 2020

GenomicIn Situ Hybridization for Whole Chromosome and Genome Analysis

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https://api.crossref.org/works/10.1534%2FGENETICS.166.3.1437

7 January 2021

Statistics of RNA secondary structures

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7 January 2021

Origin and evolution of retroelements based upon their reverse transcriptase sequences

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7 January 2021

Measuring molecular information

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https://api.crossref.org/works/10.1534%2FGENETICS.166.3.1437

7 January 2021

BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.).

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7 January 2021

Fast folding and comparison of RNA secondary structures

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7 January 2021

Dynamic copy choice: steady state between murine leukemia virus polymerase and polymerase-dependent RNase H activity determines frequency of in vivo template switching

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7 January 2021

Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants

1 reference

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7 January 2021

Fidelity of retrotransposon replication

1 reference

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7 January 2021

The genome sizes of Hordeum species show considerable variation

1 reference

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7 January 2021

On Information and Sufficiency

1 reference

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7 January 2021

10.1534/GENETICS.166.3.1437

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15082561%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15082561%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

PubMed publication ID

15082561

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15082561%20AND%20SRC:MED&resulttype=core&format=json