Large-scale identification of protein-protein interaction of Escherichia coli K-12 (Q24546090)

9

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Hirotada Mori

23

object named as

Hirotada Mori

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author name string

Mohammad Arifuzzaman

1

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Maki Maeda

2

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Aya Itoh

3

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Kensaku Nishikata

4

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Chiharu Takita

5

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Rintaro Saito

6

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Kenji Nakahigashi

8

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Aki Hirai

10

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Kohei Tsuzuki

11

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Seira Nakamura

12

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Mohammad Altaf-Ul-Amin

13

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Taku Oshima

14

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Tomoya Baba

15

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Natsuko Yamamoto

16

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Tomoyo Kawamura

17

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Tomoko Ioka-Nakamichi

18

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Masanari Kitagawa

19

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Masaru Tomita

20

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Shigehiko Kanaya

21

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Chieko Wada

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

22

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language of work or name

English

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publication date

May 2006

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published in

Genome Research

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volume

16

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page(s)

686-91

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issue

5

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cites work

1 reference

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24 March 2017

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Functional organization of the yeast proteome by systematic analysis of protein complexes

24 March 2017

1 reference

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Operons in Escherichia coli: genomic analyses and predictions

24 March 2017

1 reference

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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

24 March 2017

1 reference

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

24 March 2017

1 reference

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

24 March 2017

1 reference

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Emergence of Scaling in Random Networks

24 March 2017

1 reference

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A novel genetic system to detect protein-protein interactions

24 March 2017

1 reference

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The KEGG databases at GenomeNet

24 March 2017

1 reference

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Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins

24 March 2017

1 reference

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Global analysis of protein activities using proteome chips

24 March 2017

1 reference

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Systems biology: a brief overview

24 March 2017

1 reference

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Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research

7 April 2017

1 reference

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Interaction network containing conserved and essential protein complexes in Escherichia coli

7 April 2017

1 reference

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Genomic analysis of essentiality within protein networks

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Trigger Factor and DnaK possess overlapping substrate pools and binding specificities

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Roles for the two-hybrid system in exploration of the yeast protein interactome.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Analyzing yeast protein-protein interaction data obtained from different sources

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

DIP: the database of interacting proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Sequential mechanism of solubilization and refolding of stable protein aggregates by a bichaperone network

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Heat-inactivated proteins are rescued by the DnaK.J-GrpE set and ClpB chaperones

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Polyadenylation of stable RNA precursors in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

The CspA family in Escherichia coli: multiple gene duplication for stress adaptation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Masking of mRNA by Y-box proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Structural and functional properties of the evolutionarily ancient Y-box family of nucleic acid binding proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Complexes and complexities of the citric acid cycle in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Oxygen-regulated gene expression in Escherichia coli. The 1992 Marjory Stephenson Prize Lecture

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Identification of thermolabile Escherichia coli proteins: prevention and reversion of aggregation by DnaK and ClpB.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Interaction of the main cold shock protein CS7.4 (CspA) of Escherichia coli with the promoter region of hns.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Subunit assembly in vivo of Escherichia coli RNA polymerase: role of the amino-terminal assembly domain of alpha subunit.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

The pdhR-aceEF-lpd operon of Escherichia coli expresses the pyruvate dehydrogenase complex.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

NusG alters rho-dependent termination of transcription in vitro independent of kinetic coupling.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

Primary structure of the succinyl-CoA synthetase of Escherichia coli

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1457052

ClpB cooperates with DnaK, DnaJ, and GrpE in suppressing protein aggregation. A novel multi-chaperone system from Escherichia coli

28 November 2018

1 reference

12 December 2020

The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination

1 reference

12 December 2020

Identification of in vivo substrates of the chaperonin GroEL

1 reference

12 December 2020

RNA polymerase pausing and transcript release at the lambda tR1 terminator in vitro

1 reference

12 December 2020

Nus A protein affects transcriptional pausing and termination in vitro by binding to different sites on the transcription complex

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.4527806

1 reference

949334

949334

1 reference

1 reference

1 reference