De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics (Q24598325)

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30 January 2020

title

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics (English)

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30 January 2020

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1

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30 January 2020

Yongbo Wang

2

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30 January 2020

Guido Mastrobuoni

4

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30 January 2020

Xintian You

5

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30 January 2020

Dominic Tolle

6

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30 January 2020

Nikolaus Rajewsky

16

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30 January 2020

Wei Chen

17

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30 January 2020

author name string

Dominic Gruen

3

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30 January 2020

Matthias Dodt

7

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30 January 2020

Sebastian D Mackowiak

8

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30 January 2020

Andreas Gogol-Doering

9

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30 January 2020

Pinar Oenal

10

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30 January 2020

Agnieszka Rybak

11

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30 January 2020

Eric Ross

12

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30 January 2020

Alejandro Sánchez Alvarado

13

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30 January 2020

Stefan Kempa

14

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30 January 2020

Christoph Dieterich

15

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30 January 2020

language of work or name

English

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publication date

2 May 2011

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30 January 2020

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30 January 2020

volume

21

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30 January 2020

issue

7

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30 January 2020

page(s)

1193-1200

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

30 January 2020

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1 reference

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24 March 2017

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The sequence and de novo assembly of the giant panda genome

24 March 2017

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Automated generation of heuristics for biological sequence comparison

24 March 2017

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A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas

24 March 2017

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BLAT—The BLAST-Like Alignment Tool

24 March 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

24 March 2017

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Probability-based protein identification by searching sequence databases using mass spectrometry data

24 March 2017

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Fundamentals of planarian regeneration

24 March 2017

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

24 March 2017

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

7 April 2017

1 reference

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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

1 reference

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De novo characterization of a whitefly transcriptome and analysis of its gene expression during development.

7 April 2017

1 reference

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Bilaterian phylogeny: a broad sampling of 13 nuclear genes provides a new Lophotrochozoa phylogeny and supports a paraphyletic basal acoelomorpha

27 September 2017

1 reference

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High-resolution profiling and discovery of planarian small RNAs.

27 September 2017

1 reference

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Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

27 September 2017

1 reference

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Stem cells and regeneration in planarians

27 September 2017

1 reference

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Planarians, a tale of stem cells.

27 September 2017

1 reference

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SmedGD: the Schmidtea mediterranea genome database

27 September 2017

1 reference

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Planarian regeneration: its end is its beginning

27 September 2017

1 reference

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The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strain

27 September 2017

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Simple cDNA normalization using kamchatka crab duplex-specific nuclease

27 September 2017

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Regeneration and gene regulation in planarians.

27 September 2017

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Not your father's planarian: a classic model enters the era of functional genomics.

27 September 2017

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Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

27 September 2017

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Spliced-leader trans-splicing in freshwater planarians

30 May 2018

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Expression and functional analysis of musashi-like genes in planarian CNS regeneration.

30 May 2018

1 reference

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Automatic clustering of orthologs and inparalogs shared by multiple proteomes

28 November 2018

1 reference

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SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells

28 November 2018

1 reference

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Planarian Gtsix3, a member of the Six/so gene family, is expressed in brain branches but not in eye cells

28 November 2018

1 reference

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Planarian Gtsix3, a member of the Six/so gene family, is expressed in brain branches but not in eye cells

28 November 2018

1 reference

30 December 2023

https://opencitations.net/index/api/v1/citations/10.1016/S0925-4773(02)00341-6

Identifiers

DOI

10.1101/GR.113779.110

2 references

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30 January 2020

1 reference

2 references

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30 January 2020

PubMed publication ID

21536722

2 references