SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips (Q24598596)

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SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips

Language	Label	Description	Also known as
English	SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips	scientific article	SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips

Statements

scholarly article

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SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips (English)

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3

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Jovana Maksimovic

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author name string

Lavinia Gordon

2

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language of work or name

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publication date

2012

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13

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6

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R44

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describes a project that uses

object named as

limma

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Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3446316

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

minfi

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-6-r44

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Human DNA methylomes at base resolution show widespread epigenomic differences

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

Microarray-based DNA methylation profiling: technology and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

Normalization of cDNA microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

24 March 2017

Cancer epigenomics: DNA methylomes and histone-modification maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

7 April 2017

ROCR: visualizing classifier performance in R

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

7 April 2017

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

7 April 2017

Microarray data normalization and transformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

7 April 2017

Genome-wide DNA methylation profiling using Infinium® assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Subset quantile normalization using negative control features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Genome-wide DNA methylation profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Profiling DNA methylomes from microarray to genome-scale sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Principles and challenges of genomewide DNA methylation analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Genome-wide screen of promoter methylation identifies novel markers in melanoma.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Genome-wide identification of aberrantly methylated promoter associated CpG islands in acute lymphocytic leukemia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

CpG island mapping by epigenome prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

27 September 2017

MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-6-R44

21 January 2018

Taking the measure of the methylome.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-6-R44

21 January 2018

High density DNA methylation array with single CpG site resolution

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-6-R44

21 January 2018

Genome-scale profiling reveals a subset of genes regulated by DNA methylation that program somatic T-cell phenotypes in humans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

28 November 2018

A Genome-Wide Screen for Normally Methylated Human CpG Islands That Can Identify Novel Imprinted Genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446316

28 November 2018

Evaluation of the Infinium Methylation 450K technology

1 reference

https://pubmed.ncbi.nlm.nih.gov/22703947

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies

1 reference

https://pubmed.ncbi.nlm.nih.gov/22703947

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2012-13-6-R44

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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