Ring-cleaving dioxygenases with a cupin fold (Q24605922)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22287012%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

Ring-cleaving dioxygenases with a cupin fold (English)

1 reference

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21 January 2020

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1

1 reference

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21 January 2020

author name string

Susanne Fetzner

series ordinal

1

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language of work or name

English

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publication date

27 January 2012

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22287012%20AND%20SRC:MED&resulttype=core&format=json

Applied and Environmental Microbiology

21 January 2020

published in

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21 January 2020

volume

78

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21 January 2020

issue

8

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21 January 2020

page(s)

2505-2514

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Molecular and biochemical characterization of the 5-nitroanthranilic acid degradation pathway in Bradyrhizobium sp. strain JS329

21 January 2020

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7 April 2017

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Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase fromSilicibacter Pomeroyi

7 April 2017

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Swapping metals in Fe- and Mn-dependent dioxygenases: Evidence for oxygen activation without a change in metal redox state

7 April 2017

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Crystal Structures of Fe2+ Dioxygenase Superoxo, Alkylperoxo, and Bound Product Intermediates

7 April 2017

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Identification and analysis of a bottleneck in PCB biodegradation

7 April 2017

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Functional analysis of the copper-dependent quercetin 2,3-dioxygenase. 1. Ligand-induced coordination changes probed by X-ray crystallography: inhibition, ordering effect, and mechanistic insights

7 April 2017

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Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 A resolution

7 April 2017

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Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus

7 April 2017

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Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities

7 April 2017

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Crystal structure and resonance Raman studies of protocatechuate 3,4-dioxygenase complexed with 3,4-dihydroxyphenylacetate

7 April 2017

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Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding

7 April 2017

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Structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa at 2.15 A resolution

7 April 2017

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The yeast gene YJR025c encodes a 3-hydroxyanthranilic acid dioxygenase and is involved in nicotinic acid biosynthesis

7 April 2017

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The rutin catabolic pathway with special emphasis on quercetinase

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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27 September 2017

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27 September 2017

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Investigation of catechol 2,3-dioxygenase and 16S rRNA gene diversity in hypoxic, petroleum hydrocarbon contaminated groundwater

27 September 2017

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27 September 2017

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Trapping and spectroscopic characterization of an FeIII-superoxo intermediate from a nonheme mononuclear iron-containing enzyme

27 September 2017

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Thiol dioxygenases: unique families of cupin proteins.

27 September 2017

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27 September 2017

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Characterization of the anthranilate degradation pathway in Geobacillus thermodenitrificans NG80-2.

27 September 2017

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The University of Minnesota Biocatalysis/Biodegradation Database: improving public access

27 September 2017

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Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air-sparging bioremediation

27 September 2017

1 reference

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Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review

27 September 2017

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Mechanism of extradiol aromatic ring-cleaving dioxygenases

27 September 2017

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Anaerobic metabolism of aromatic compounds

27 September 2017

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Versatility of biological non-heme Fe(II) centers in oxygen activation reactions.

27 September 2017

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Non-heme iron-dependent dioxygenases: unravelling catalytic mechanisms for complex enzymatic oxidations

27 September 2017

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Characterization of metal binding in the active sites of acireductone dioxygenase isoforms from Klebsiella ATCC 8724.

27 September 2017

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Biochemical and molecular characterization of a quercetinase from Penicillium olsonii.

27 September 2017

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One protein, two enzymes revisited: a structural entropy switch interconverts the two isoforms of acireductone dioxygenase

27 September 2017

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Variations of the 2-His-1-carboxylate theme in mononuclear non-heme FeII oxygenases

27 September 2017

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The ins and outs of ring-cleaving dioxygenases.

27 September 2017

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Crystal structure of 3-hydroxyanthranilic acid 3,4-dioxygenase from Saccharomyces cerevisiae: a special subgroup of the type III extradiol dioxygenases

27 September 2017

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Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins

27 September 2017

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Kinetic and spectroscopic studies on the quercetin 2,3-dioxygenase from Bacillus subtilis

27 September 2017

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Suicide Inactivation of Catechol 2,3-Dioxygenase from Pseudomonas putida mt-2 by 3-Halocatechols.

27 September 2017

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Spectroscopic studies of the anaerobic enzyme-substrate complex of catechol 1,2-dioxygenase

27 September 2017

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Tryptophan catabolism: identification and characterization of a new degradative pathway

27 September 2017

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Structural studies on 3-hydroxyanthranilate-3,4-dioxygenase: the catalytic mechanism of a complex oxidation involved in NAD biosynthesis

27 September 2017

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The crystal structure of a quercetin 2,3-dioxygenase from Bacillus subtilis suggests modulation of enzyme activity by a change in the metal ion at the active site(s).

27 September 2017

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Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases

27 September 2017

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Dioxygen activation at mononuclear nonheme iron active sites: enzymes, models, and intermediates

27 September 2017

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Bacillus subtilis YxaG is a novel Fe-containing quercetin 2,3-dioxygenase.

27 September 2017

1 reference

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Cupins: the most functionally diverse protein superfamily?

27 September 2017

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Fruits and vegetables in the prevention of cellular oxidative damage

27 September 2017

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Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7.

27 September 2017

1 reference

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Modeling and experiment yields the structure of acireductone dioxygenase from Klebsiella pneumoniae

27 September 2017

1 reference

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Evolution of functional diversity in the cupin superfamily.

27 September 2017

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Mechanistic studies of two dioxygenases in the methionine salvage pathway of Klebsiella pneumoniae.

27 September 2017

1 reference

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Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins.

27 September 2017

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Mechanistic diversity in a metalloenzyme superfamily

27 September 2017

1 reference

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Flavonoids as antioxidants

27 September 2017

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27 September 2017

Catechol dioxygenases

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Flavonol 2,4-dioxygenase from Aspergillus niger DSM 821, a type 2 CuII-containing glycoprotein

27 September 2017

1 reference

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Structure/function relationships in nickel metallobiochemistry

27 September 2017

1 reference

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Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31.

27 September 2017

1 reference

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27 September 2017

One protein, two enzymes

1 reference

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Biochemical and molecular characterization of 1-hydroxy-2-naphthoate dioxygenase from Nocardioides sp. KP7.

27 September 2017

1 reference

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Free radical scavenging and antioxidant activity of plant flavonoids

27 September 2017

1 reference

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Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol.

27 September 2017

1 reference

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Structure and assembly of protocatechuate 3,4-dioxygenase

27 September 2017

1 reference

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Electron paramagnetic resonance detection of intermediates in the enzymatic cycle of an extradiol dioxygenase

27 September 2017

1 reference

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Cloning of a gene encoding 4-amino-3-hydroxybenzoate 2,3-dioxygenase from Bordetella sp. 10d.

30 May 2018

1 reference

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Characterization of quercetin binding site on DNA gyrase

30 May 2018

1 reference

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Quinolinic acid: an endogenous metabolite that produces axon-sparing lesions in rat brain

30 May 2018

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Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2.

30 May 2018

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Quercetinase QueD of Streptomyces sp. FLA, a monocupin dioxygenase with a preference for nickel and cobalt.

30 May 2018

1 reference

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Biodegradation of chrysene, an aromatic hydrocarbon by Polyporus sp. S133 in liquid medium

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Salicylate 1,2-dioxygenase from Pseudaminobacter salicylatoxidans: crystal structure of a peculiar ring-cleaving dioxygenase

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

A new monocupin quercetinase of Streptomyces sp. FLA: identification and heterologous expression of the queD gene and activity of the recombinant enzyme towards different flavonols

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Spectroscopic and electronic structure study of the enzyme-substrate complex of intradiol dioxygenases: substrate activation by a high-spin ferric non-heme iron site

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Flavonoids Released Naturally from Alfalfa Seeds Enhance Growth Rate of Rhizobium meliloti

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Corroborative models of the cobalt(II) inhibited Fe/Mn superoxide dismutases.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

The mechanism of inactivation of 3-hydroxyanthranilate-3,4-dioxygenase by 4-chloro-3-hydroxyanthranilate

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

The pyridine ring of NAD is formed by a nonenzymatic pericyclic reaction

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Dioxygenases without requirement for cofactors and their chemical model reaction: compulsory order ternary complex mechanism of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase involving general base catalysis by histidine 251 and single-electron oxidat

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Biochemical and molecular characterization of a ring fission dioxygenase with the ability to oxidize (substituted) salicylate(s) from Pseudaminobacter salicylatoxidans

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Evidence for a new metal in a known active site: purification and characterization of an iron-containing quercetin 2,3-dioxygenase from Bacillus subtilis

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

NAD biosynthesis: identification of the tryptophan to quinolinate pathway in bacteria

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Branching of o-nitrobenzoate degradation pathway in Arthrobacter protophormiae RKJ100: identification of new intermediates.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

A novel meta-cleavage dioxygenase that cleaves a carboxyl-group-substituted 2-aminophenol. Purification and characterization of 4-amino-3-hydroxybenzoate 2,3-dioxygenase from Bordetella sp. strain 10d.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

EPR characterization of the mononuclear Cu-containing Aspergillus japonicus quercetin 2,3-dioxygenase reveals dramatic changes upon anaerobic binding of substrates.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Spectroscopic and electronic structure studies of protocatechuate 3,4-dioxygenase: nature of tyrosinate-Fe(III) bonds and their contribution to reactivity

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Kinetics and mechanism of the base-catalyzed oxygenation of flavonol in DMSO-H(2)O solution

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

Spectroscopic Investigation of Reduced Protocatechuate 3,4-Dioxygenase: Charge-Induced Alterations in the Active Site Iron Coordination Environment

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318818

A novel degradative pathway of 2-nitrobenzoate via 3-hydroxyanthranilate in Pseudomonas fluorescens strain KU-7

28 November 2018

1 reference

12 December 2020

Degradation of rutin by Aspergillus flavus. Studies on specificity, inhibition, and possible reaction mechanism of quercetinase

1 reference

12 December 2020

Exudation of allelopathic substances in buckwheat (Fagopyrum esculentum Moench)

1 reference

12 December 2020

Crystal structure of mammalian cysteine dioxygenase. A novel mononuclear iron center for cysteine thiol oxidation

1 reference

12 December 2020

Gentisate 1,2-dioxygenase from pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans

1 reference

12 December 2020

X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism

1 reference

12 December 2020

An EXAFS study of the interaction of substrate with the ferric active site of protocatechuate 3,4-dioxygenase

1 reference

12 December 2020

Gentisate 1,2-dioxygenase from Pseudomonas. Substrate coordination to active site Fe2+ and mechanism of turnover

1 reference

12 December 2020

Kinetics and mechanism of the oxygenation of potassium flavonolate. Evidence for an electron transfer mechanism

1 reference

12 December 2020

[17O]Water and nitric oxide binding by protocatechuate 4,5-dioxygenase and catechol 2,3-dioxygenase. Evidence for binding of exogenous ligands to the active site Fe2+ of extradiol dioxygenases

1 reference

12 December 2020

Cofactor-independent oxygenases go it alone

1 reference

12 December 2020

Leaf surface flavonoids of Chrysothamnus

1 reference

Crossref

https://api.crossref.org/works/10.1128%2FAEM.07651-11

7 January 2021

inferred from DOI database lookup

Dioxygenase enzymes: catalytic mechanisms and chemical models

1 reference

Crossref

https://api.crossref.org/works/10.1128%2FAEM.07651-11

7 January 2021

inferred from DOI database lookup

Standard Electrode Potentials and Temperature Coefficients in Water at 298.15 K

1 reference

Crossref

https://api.crossref.org/works/10.1128%2FAEM.07651-11

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1128/AEM.07651-11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22287012%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22287012%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

22287012

1 reference