PSI-Search: iterative HOE-reduced profile SSEARCH searching (Q24607086)

Hamish McWilliam

2

0 references

William Raymond Pearson

William R Pearson

6

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Andrew Peter Cowley

Andrew Cowley

4

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Rodrigo López

5

Rodrigo Lopez

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author name string

Mickael Goujon

Creative Commons Attribution-NonCommercial 3.0 Unported

3

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language of work or name

English

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publication date

15 June 2012

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1 reference

28

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issue

12

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page(s)

1650-1

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copyright license

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

EMBOSS: the European Molecular Biology Open Software Suite

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Identification of common molecular subsequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Accelerated Profile HMM Searches

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Hidden Markov model speed heuristic and iterative HMM search procedure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

RefProtDom: a protein database with improved domain boundaries and homology relationships

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

HangOut: generating clean PSI-BLAST profiles for domains with long insertions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Homologous over-extension: a challenge for iterative similarity searches

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

PSI-BLAST pseudocounts and the minimum description length principle.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Powerful fusion: PSI-BLAST and consensus sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

The effectiveness of position- and composition-specific gap costs for protein similarity searches.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Protein database searches using compositionally adjusted substitution matrices

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

A performance enhanced PSI-BLAST based on hybrid alignment

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371869

10.1093/BIOINFORMATICS/BTS240

28 November 2018

Identifiers

DOI

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vgeqlriuknhepoiqomriptwqju

30 July 2022

journals/bioinformatics/LiMGCLP12

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_vgeqlriuknhepoiqomriptwqju

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vgeqlriuknhepoiqomriptwqju

30 July 2022

https://api.fatcat.wiki/v0/release/vgeqlriuknhepoiqomriptwqju

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/vgeqlriuknhepoiqomriptwqju

PubMed publication ID

1 reference

30 July 2022