Insights from genomic profiling of transcription factors (Q24611607)

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Europe PubMed Central

title

Insights from genomic profiling of transcription factors (English)

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Peggy J Farnham

1

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language of work or name

English

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publication date

September 2009

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published in

Nature Reviews Genetics

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volume

10

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issue

9

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page(s)

605-16

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cites work

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Serum response factor binding sites differ in three human cell types

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7 April 2017

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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7 April 2017

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7 April 2017

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

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7 April 2017

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Diversity and complexity in DNA recognition by transcription factors

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

27 September 2017

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E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites

27 September 2017

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Unique ERalpha cistromes control cell type-specific gene regulation

27 September 2017

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27 September 2017

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Visualizing chromatin dynamics in intact cells.

27 September 2017

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An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

27 September 2017

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Genome-wide occupancy of SREBP1 and its partners NFY and SP1 reveals novel functional roles and combinatorial regulation of distinct classes of genes

27 September 2017

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Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

27 September 2017

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27 September 2017

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Critical parameters for genome editing using zinc finger nucleases

27 September 2017

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27 September 2017

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Genome-wide pattern of TCF7L2/TCF4 chromatin occupancy in colorectal cancer cells

27 September 2017

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27 September 2017

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27 September 2017

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Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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28 November 2018

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28 November 2018

Identifiers

DOI

10.1038/NRG2636

1 reference

Dimensions Publication ID

2313154

1011987780

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2313154

1 reference

1 reference

1 reference