PRIDB: a Protein-RNA interface database (Q24612916)

5

0 references

Rasna R. Walia

object named as

Rasna R Walia

2

0 references

Drena Dobbs

object named as

Drena Dobbs

7

0 references

author name string

Benjamin A Lewis

1

0 references

Michael Terribilini

3

0 references

Jeff Ferguson

Creative Commons Attribution-NonCommercial 2.5 Generic

4

0 references

language of work or name

English

0 references

publication date

January 2011

0 references

published in

Nucleic Acids Research

0 references

volume

39

0 references

issue

Database issue

0 references

page(s)

D277-82

0 references

copyright license

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

PROSITE, a protein domain database for functional characterization and annotation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

InterPro: the integrative protein signature database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

The Bioperl toolkit: Perl modules for the life sciences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

7 April 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

RNA-binding proteins in human genetic disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

RNA-binding proteins: modular design for efficient function

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Regulation of mRNA translation and stability by microRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

RNA processing and its regulation: global insights into biological networks

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

The Protein-DNA Interface database

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Struct-NB: predicting protein-RNA binding sites using structural features

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Exploiting structural and topological information to improve prediction of RNA-protein binding sites

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Role of plant RNA-binding proteins in development, stress response and genome organization.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

The ribonome: a dominant force in co-ordinating gene expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Classifying RNA-binding proteins based on electrostatic properties

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Tetrahymena ORC contains a ribosomal RNA fragment that participates in rDNA origin recognition.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Identifying interaction sites in "recalcitrant" proteins: predicted protein and RNA binding sites in rev proteins of HIV-1 and EIAV agree with experimental data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Prediction of RNA binding sites in proteins from amino acid sequence

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

PIRSF: family classification system at the Protein Information Resource

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

PRINTS and its automatic supplement, prePRINTS.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Structure-based analysis of protein-RNA interactions using the program ENTANGLE.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

Prediction of protein-RNA binding sites by a random forest method with combined features

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1108

Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1108

Prediction of RNA-binding residues in protein sequences using support vector machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1108

BIPA: a database for protein-nucleic acid interaction in 3D structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1108

Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1108

Identification of RNA-binding sites in proteins by integrating various sequence information

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013700

NPIDB: a database of nucleic acids-protein interactions

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21071426

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1108

1 reference

journals/nar/LewisWTFZHD11

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

21071426

1 reference