Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching (Q24624652)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11160898%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

title

Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching (English)

1 reference

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3 November 2019

0 references

3

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3 November 2019

author name string

I Barrette

series ordinal

1

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3 November 2019

G Poisson

series ordinal

2

1 reference

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3 November 2019

F Major

series ordinal

4

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3 November 2019

language of work or name

English

0 references

publication date

1 February 2001

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3 November 2019

published in

Nucleic Acids Research

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3 November 2019

volume

29

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3 November 2019

issue

3

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3 November 2019

page(s)

753-758

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11160898%20AND%20SRC:MED&resulttype=core&format=json

Basic local alignment search tool

3 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

All-atom empirical potential for molecular modeling and dynamics studies of proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

A dynamic programming algorithm for RNA structure prediction including pseudoknots

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Potential pseudoknots in the PrP-encoding mRNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Analysis of 27 mammalian and 9 avian PrPs reveals high conservation of flexible regions of the prion protein

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Eight prion strains have PrP(Sc) molecules with different conformations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Accumulation of protease-resistant prion protein (PrP) and apoptosis of cerebellar granule cells in transgenic mice expressing a PrP insertional mutation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Non-Watson-Crick base pairs in RNA-protein recognition

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

A transmembrane form of the prion protein in neurodegenerative disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

The cellular prion protein binds copper in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Prion disease associated with a novel nine octapeptide repeat insertion in the PRNP gene.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

mRNA stability plays a major role in regulating the temperature-specific expression of a Tetrahymena thermophila surface protein

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Control of prokaryotic translational initiation by mRNA secondary structure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Transmissible familial Creutzfeldt-Jakob disease associated with five, seven, and eight extra octapeptide coding repeats in the PRNP gene

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Protein secondary structural types are differentially coded on messenger RNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Prion protein gene analysis in new variant cases of Creutzfeldt-Jakob disease.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

A stem-loop "kissing" model for the initiation of recombination and the origin of introns

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Stem loops in HIV and prion protein mRNAs.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

The combination of symbolic and numerical computation for three-dimensional modeling of RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Prominent psychiatric features and early onset in an inherited prion disease with a new insertional mutation in the prion protein gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Neurological illness in transgenic mice expressing a prion protein with an insertional mutation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

The cellular prion protein binds copper in vivo

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Thermodynamic prediction of conserved secondary structure: application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

A method for assessing the statistical significance of RNA folding.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30388

Interaction of 68-kDa TAR RNA-binding protein and other cellular proteins with prion protein-RNA stem-loop

28 November 2018

1 reference

12 December 2020

Rnq1: an epigenetic modifier of protein function in yeast

1 reference

12 December 2020

Predicting U-turns in ribosomal RNA with comparative sequence analysis

1 reference

12 December 2020

Oligopeptide-repeat expansions modulate ‘protein-only’ inheritance in yeast

1 reference

12 December 2020

cDNA cloning of turtle prion protein

1 reference

12 December 2020

Brain copper content and cuproenzyme activity do not vary with prion protein expression level

1 reference

12 December 2020

Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/29.3.753

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11160898%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11160898%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

PubMed publication ID

11160898

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11160898%20AND%20SRC:MED&resulttype=core&format=json