A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors (Q24642967)

Protein WBSCR14 homolog CELE_T20B12.6

1 reference

Helix Loop Helix CELE_C43H6.8

1 reference

Helix Loop Helix CELE_M05B5.5

1 reference

MaX-Like CELE_T19B10.11

1 reference

MAD-Like CELE_R03E9.1

1 reference

MaX-Like CELE_F40G9.11

1 reference

MaX-Like CELE_F46G10.6

1 reference

Helix-loop-helix protein 4 CELE_T05G5.2

1 reference

Aryl hydrocarbon receptor protein 1 CELE_C41G7.5

1 reference

Hypoxia-inducible factor 1 CELE_F38A6.3

1 reference

Aryl hydrocarbon receptor nuclear translocator homolog CELE_C25A1.11

1 reference

Myoblast determination protein 1 homolog CELE_B0304.1

1 reference

Federico De Masi

2

0 references

Marian Walhout

7

object named as

Albertha J M Walhout

0 references

0 references

6

Martha L Bulyk

0 references

author name string

Christian A Grove

1

0 references

M Inmaculada Barrasa

3

0 references

Daniel E Newburger

4

0 references

Mark J Alkema

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

5

0 references

language of work or name

English

0 references

publication date

23 July 2009

0 references

published in

Cell

0 references

volume

138

0 references

issue

2

0 references

page(s)

314-27

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A loss-of-function mutation in the binding domain of HAND1 predicts hypoplasia of the human hearts

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

An overview of the basic helix-loop-helix proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The generic genome browser: a building block for a model organism system database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Mutations in TWIST, a basic helix-loop-helix transcription factor, in Saethre-Chotzen syndrome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

High-resolution DNA-binding specificity analysis of yeast transcription factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Protein interaction mapping in C. elegans using proteins involved in vulval development

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The C. elegans MDL-1 and MXL-1 proteins can functionally substitute for vertebrate MAD and MAX

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

TM4: a free, open-source system for microarray data management and analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A C. elegans Myc-like network cooperates with semaphorin and Wnt signaling pathways to control cell migration

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A first version of the Caenorhabditis elegans Promoterome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

cis-Regulatory and protein evolution in orthologous and duplicate genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Vertebrate hairy and Enhancer of split related proteins: transcriptional repressors regulating cellular differentiation and embryonic patterning

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The Caenorhabditis elegans hif-1 gene encodes a bHLH-PAS protein that is required for adaptation to hypoxia

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

High-throughput yeast two-hybrid assays for large-scale protein interaction mapping

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The glial transcription factor Sox10 binds to DNA both as monomer and dimer with different functional consequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Analysis of a Caenorhabditis elegans Twist homolog identifies conserved and divergent aspects of mesodermal patterning

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A C. elegans E/Daughterless bHLH protein marks neuronal but not striated muscle development

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Single amino acid substitutions alter helix-loop-helix protein specificity for bases flanking the core CANNTG motif

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

TFE3 transcriptionally activates hepatic IRS-2, participates in insulin signaling and ameliorates diabetes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The C. elegans NeuroD homolog cnd-1 functions in multiple aspects of motor neuron fate specification.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Control of cell lineage-specific development and transcription by bHLH-PAS proteins

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The Caenorhabditis elegans MYOD homologue HLH-1 is essential for proper muscle function and complete morphogenesis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Transcription factor functionality and transcription regulatory networks

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Characterization of Drosophila and Caenorhabditis elegans NXF-like-factors, putative homologs of mammalian NXF.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

bHLH transcription factors regulate organ morphogenesis via activation of an ADAMTS protease in C. elegans

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A gene-centered C. elegans protein-DNA interaction network

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

The basic helix-loop-helix transcription factors LIN-32 and HLH-2 function together in multiple steps of a C. elegans neuronal sublineage.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774807

Sequences flanking the E-box contribute to cooperative binding by c-Myc/Max heterodimers to adjacent binding sites

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19632181

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2009.04.058

1 reference

419953

419953

1 reference

1 reference

1 reference