Duality of polynucleotide substrates for Phi29 DNA polymerase: 3'--&gt;5' RNase activity of the enzyme (Q24645532)

1

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Zivile Kiveryte

2

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Vilma Zimbaite-Ruskuliene

3

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Tomas Radzvilavicius

4

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Arvydas Janulaitis

Exoribonuclease superfamilies: structural analysis and phylogenetic distribution

5

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language of work or name

English

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publication date

March 2008

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published in

RNA

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volume

14

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issue

3

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page(s)

503-13

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cites work

1 reference

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The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains

7 April 2017

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Primer-terminus stabilization at the 3'-5' exonuclease active site of phi29 DNA polymerase. Involvement of two amino acid residues highly conserved in proofreading DNA polymerases

7 April 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates

7 April 2017

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SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

7 April 2017

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Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

7 April 2017

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A microRNA detection system based on padlock probes and rolling circle amplification.

7 April 2017

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Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29.

27 September 2017

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Parallel gene analysis with allele-specific padlock probes and tag microarrays

27 September 2017

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The physiological role of RNase T can be explained by its unusual substrate specificity

27 September 2017

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Detection of DNA point mutations and mRNA expression levels by rolling circle amplification in individual cells

27 September 2017

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In situ detection of messenger RNA using digoxigenin-labeled oligonucleotides and rolling circle amplification

27 September 2017

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27 September 2017

Phi29 family of phages

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RNA-templated DNA ligation for transcript analysis

27 September 2017

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The DNase activity of RNase T and its application to DNA cloning

27 September 2017

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A single tyrosine prevents insertion of ribonucleotides in the eukaryotic-type phi29 DNA polymerase

27 September 2017

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Signal amplification of padlock probes by rolling circle replication

27 September 2017

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Mutation detection and single-molecule counting using isothermal rolling-circle amplification

27 September 2017

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Mutational analysis of phi29 DNA polymerase residues acting as ssDNA ligands for 3'-5' exonucleolysis

27 September 2017

1 reference

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Relating structure to function in phi29 DNA polymerase

27 September 2017

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RNase T shares conserved sequence motifs with DNA proofreading exonucleases

27 September 2017

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3'-->5' exonuclease active site of phi 29 DNA polymerase. Evidence favoring a metal ion-assisted reaction mechanism

27 September 2017

1 reference

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The 3'-5' exonuclease of DNA polymerase I of Escherichia coli: contribution of each amino acid at the active site to the reaction

27 September 2017

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A general structure for DNA-dependent DNA polymerases.

27 September 2017

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Metal activation of synthetic and degradative activities of phi 29 DNA polymerase, a model enzyme for protein-primed DNA replication

30 May 2018

1 reference

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Purification and characterization of Escherichia coli RNase T.

30 May 2018

1 reference

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Method for assigning double-stranded RNA structures.

19 June 2018

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Analysis of T-cell receptor V beta gene repertoires after immune stimulation and in malignancy by use of padlock probes and microarrays

28 November 2018

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The bacteriophage phi 29 DNA polymerase, a proofreading enzyme

28 November 2018

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Identification of a potent DNase activity associated with RNase T of Escherichia coli

28 November 2018

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12 December 2020

Studies of the specificity of deoxyribonuclease I. I. Hydrolysis of a trinucleotide

1 reference

12 December 2020

Phage phi 29 DNA polymerase residues involved in the proper stabilisation of the primer-terminus at the 3'-5' exonuclease active site

1 reference

12 December 2020

Mechanism of action of RNase T. II. A structural and functional model of the enzyme

1 reference

12 December 2020

Mechanism of action of RNase T. I. Identification of residues required for catalysis, substrate binding, and dimerization

1 reference

12 December 2020

1 reference

12 December 2020

A conserved 3'----5' exonuclease active site in prokaryotic and eukaryotic DNA polymerases

1 reference

12 December 2020