CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data (Q24646326)

2

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Mark Berjanskii

3

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Peter Tang

4

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Jianjun Zhou

5

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Guohui Lin

Consistent blind protein structure generation from NMR chemical shift data

6

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language of work or name

English

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publication date

1 July 2008

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published in

Nucleic Acids Research

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volume

36

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page(s)

W496-502

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issue

Web Server issue

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

PREDITOR: a web server for predicting protein torsion angle restraints

7 April 2017

1 reference

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The RCSB PDB information portal for structural genomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

7 April 2017

https://api.crossref.org/works/10.1093%2FNAR%2FGKN305

Automated assignment of ambiguous nuclear overhauser effects with ARIA

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

PPT-DB: the protein property prediction and testing database.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Building native protein conformation from NMR backbone chemical shifts using Monte Carlo fragment assembly

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Protein structure determination from NMR chemical shifts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

NMR: prediction of protein flexibility

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Growth of novel protein structural data.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

NMR - this other method for protein and nucleic acid structure determination.

27 September 2017

1 reference

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Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

RefDB: a database of uniformly referenced protein chemical shifts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

CLOUDS, a protocol for deriving a molecular proton density via NMR.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

The direct determination of protein structure by NMR without assignment.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Use of chemical shifts in macromolecular structure determination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

WebMol--a Java-based PDB viewer.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

An empirical energy function for threading protein sequence through the folding motif

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Improved strategies for the determination of protein structures from NMR data: the solution structure of acyl carrier protein

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

GENFOLD: a genetic algorithm for folding protein structures using NMR restraints

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447725

Site- and time-specific gene targeting in the mouse

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN305

Heteronuclear relayed E.COSY applied to the determination of accurate 3J(HN,C') and 3J(H beta,C') coupling constants in desulfovibrio vulgaris flavodoxin

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18515350

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Local knowledge helps determine protein structures

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/NAR/GKN305

Identifiers

DOI

10.1093/NAR/GKN305

1 reference

journals/nar/WishartABTZL08

1697595

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1697595

1 reference

1 reference

1 reference