Hit selection with false discovery rate control in genome-scale RNAi screens (Q24647185)

1

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Pei Fen Kuan

2

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Marc Ferrer

3

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Xiaohua Shu

4

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Yingxue C Liu

5

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Adam T Gates

6

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Priya Kunapuli

7

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Erica M Stec

8

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Min Xu

9

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Shane D Marine

10

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Daniel J Holder

11

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Joseph F Heyse

13

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Amy S Espeseth

Characteristic differences between the promoters of intron-containing and intronless ribosomal protein genes in yeast

14

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language of work or name

English

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publication date

August 2008

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published in

Nucleic Acids Research

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volume

36

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issue

14

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page(s)

4667-79

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A Comparison of Assay Performance Measures in Screening Assays: Signal Window, Z' Factor, and Assay Variability Ratio

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A large-scale RNAi screen in human cells identifies new components of the p53 pathway

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Novel analytic criteria and effective plate designs for quality control in genome-scale RNAi screens

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A pair of new statistical parameters for quality control in RNA interference high-throughput screening assays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Alternative statistical parameter for high-throughput screening assay quality assessment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Median absolute deviation to improve hit selection for genome-scale RNAi screens

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Increasing the robustness and validity of RNAi screens

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A new method with flexible and balanced control of false negatives and false positives for hit selection in RNA interference high-throughput screening assays

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

RNAi therapeutics: a potential new class of pharmaceutical drugs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A genome wide analysis of ubiquitin ligases in APP processing identifies a novel regulator of BACE1 mRNA levels

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Microarrays: quality control

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Robust statistical methods for hit selection in RNA interference high-throughput screening experiments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Statistical practice in high-throughput screening data analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Integration of association statistics over genomic regions using Bayesian adaptive regression splines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A cell-based beta-lactamase reporter gene assay for the identification of inhibitors of hepatitis C virus replication

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Gene silencing in alveolar type II cells using cell-specific promoter in vitro and in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

A library of siRNA duplexes targeting the phosphoinositide 3-kinase pathway: determinants of gene silencing for use in cell-based screens

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Statistical and graphical methods for quality control determination of high-throughput screening data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Analysis of cell-based RNAi screens.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Genome-wide analysis of human kinases in clathrin- and caveolae/raft-mediated endocytosis

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Detecting differential gene expression with a semiparametric hierarchical mixture method

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Enhancement of alpha -helicity in the HIV-1 inhibitory peptide DP178 leads to an increased affinity for human monoclonal antibody 2F5 but does not elicit neutralizing responses in vitro. Implications for vaccine design

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504311

Genome-wide screens for effective siRNAs through assessing the size of siRNA effects

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18628291

12 December 2020

inferred from PubMed ID database lookup

Standards and practices

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN435

7 January 2021

inferred from DOI database lookup

A direct approach to false discovery rates

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN435

7 January 2021

inferred from DOI database lookup

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN435

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1093/NAR/GKN435

1 reference

release_c72hdxhdhnbf5peycipqbj2xli

4758241

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/c72hdxhdhnbf5peycipqbj2xli

24 November 2022

mapped directly with Wikidata item

4758241

1 reference

1 reference

1 reference