Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers (Q24651915)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19129543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers (English)

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19 January 2020

1

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19 January 2020

Mathieu Lupien

2

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19 January 2020

Myles Brown

7

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19 January 2020

author name string

Clifford A Meyer

3

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19 January 2020

Michael P Verzi

4

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19 January 2020

Ramesh A Shivdasani

5

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19 January 2020

X Shirley Liu

6

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19 January 2020

language of work or name

English

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publication date

7 January 2009

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19 January 2020

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19 January 2020

volume

19

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19 January 2020

issue

3

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19 January 2020

page(s)

372-380

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FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

19 January 2020

cites work

1 reference

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7 April 2017

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

7 April 2017

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

7 April 2017

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Histone arginine methylation regulates pluripotency in the early mouse embryo

7 April 2017

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FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

7 April 2017

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7 April 2017

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From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response

7 April 2017

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Control of pancreas and liver gene expression by HNF transcription factors

7 April 2017

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Methylation at arginine 17 of histone H3 is linked to gene activation

7 April 2017

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High-resolution profiling of histone methylations in the human genome

7 April 2017

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Chromatin modifications and their function

7 April 2017

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A gene-expression signature as a predictor of survival in breast cancer

7 April 2017

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The complex language of chromatin regulation during transcription

7 April 2017

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

7 April 2017

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An extended transcriptional network for pluripotency of embryonic stem cells

7 April 2017

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High-resolution mapping and characterization of open chromatin across the genome

7 April 2017

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Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

7 April 2017

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XBP1 controls diverse cell type- and condition-specific transcriptional regulatory networks

7 April 2017

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

7 April 2017

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Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription

7 April 2017

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Dynamic regulation of nucleosome positioning in the human genome

7 April 2017

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In vivo enhancer analysis of human conserved non-coding sequences

7 April 2017

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Genome-wide analysis of estrogen receptor binding sites

7 April 2017

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Sensors and signals: a coactivator/corepressor/epigenetic code for integrating signal-dependent programs of transcriptional response

7 April 2017

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Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer

7 April 2017

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Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

7 April 2017

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Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

7 April 2017

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CCCTC-binding factor confines the distal action of estrogen receptor.

7 April 2017

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E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites

28 September 2017

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Unique ERalpha cistromes control cell type-specific gene regulation

28 September 2017

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Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression

28 September 2017

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Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells

28 September 2017

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Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells

28 September 2017

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Interaction of the glucocorticoid receptor with the chromatin landscape

28 September 2017

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GATA-1 modulates the chromatin structure and activity of the chicken alpha-globin 3' enhancer

28 September 2017

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A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members

28 September 2017

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Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver

28 September 2017

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Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

28 September 2017

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Cell- and gene-specific regulation of primary target genes by the androgen receptor

28 September 2017

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A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth

28 September 2017

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Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells

28 September 2017

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Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer

28 September 2017

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Whole-genome cartography of estrogen receptor alpha binding sites

28 September 2017

1 reference

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Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells.

28 September 2017

1 reference

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Predicting tissue-specific enhancers in the human genome

28 September 2017

1 reference

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Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells

28 September 2017

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The activity and stability of the transcriptional coactivator p/CIP/SRC-3 are regulated by CARM1-dependent methylation

28 September 2017

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Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

28 September 2017

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A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer

28 September 2017

1 reference

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The Foxa family of transcription factors in development and metabolism

28 September 2017

1 reference

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Model-based analysis of tiling-arrays for ChIP-chip.

28 September 2017

1 reference

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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2661808

The initiation of liver development is dependent on Foxa transcription factors

28 September 2017

1 reference

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Developmental control via GATA factor interplay at chromatin domains

28 September 2017

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Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

28 September 2017

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Developmental competence of the gut endoderm: genetic potentiation by GATA and HNF3/fork head proteins

28 September 2017

1 reference

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Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome.

28 September 2017

1 reference

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CARM1 regulates estrogen-stimulated breast cancer growth through up-regulation of E2F1.

30 May 2018

1 reference

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High-throughput mapping of the chromatin structure of human promoters.

28 November 2018

1 reference

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The Role of Hepatocyte Nuclear Factor-3α (Forkhead Box A1) and Androgen Receptor in Transcriptional Regulation of Prostatic Genes

28 November 2018

1 reference

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Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

28 November 2018

1 reference

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A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19129543

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.084582.108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19129543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19129543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

PubMed publication ID

19129543

1 reference