A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase (Q24654692)

1

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J Alfken

2

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Y G Kim

3

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I S Mian

4

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K Nishikura

5

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A Rich

Proceedings of the National Academy of Sciences of the United States of America

6

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language of work or name

English

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publication date

5 August 1997

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published in

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volume

94

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issue

16

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page(s)

8421-6

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cites work

Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases

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Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences

7 April 2017

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A method to identify and characterize Z-DNA binding proteins using a linear oligodeoxynucleotide

7 April 2017

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Solution structure of the LexA repressor DNA binding domain determined by 1H NMR spectroscopy

7 April 2017

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Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing

7 April 2017

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Intron sequence directs RNA editing of the glutamate receptor subunit GluR2 coding sequence

7 April 2017

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Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase

7 April 2017

1 reference

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Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase

7 April 2017

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Basic local alignment search tool

7 April 2017

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

7 April 2017

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A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex

7 April 2017

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Crystal structure of globular domain of histone H5 and its implications for nucleosome binding

7 April 2017

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Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices

7 April 2017

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A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase

7 April 2017

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Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex

7 April 2017

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Molecular structure of a left-handed double helical DNA fragment at atomic resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Regulation of serotonin-2C receptor G-protein coupling by RNA editing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

A mammalian RNA editing enzyme

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Control of kinetic properties of AMPA receptor channels by nuclear RNA editing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Determinants of Ca2+ permeability in both TM1 and TM2 of high affinity kainate receptor channels: diversity by RNA editing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RNA editing in brain controls a determinant of ion flow in glutamate-gated channels

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Hidden Markov models in computational biology. Applications to protein modeling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Combining evolutionary information and neural networks to predict protein secondary structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Supercoiling of the DNA template during transcription

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Searching databases of conserved sequence regions by aligning protein multiple-alignments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Five years on the wings of fork head

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RNA editing, introns and evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

The biology of left-handed Z-DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RNA binding and translational suppression by bicoid

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Editing of the GLuR-B ion channel RNA in vitro by recombinant double-stranded RNA adenosine deaminase.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Protein family classification based on searching a database of blocks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Domain interactions and antigen binding of recombinant anti-Z-DNA antibody variable domains. The role of heavy and light chains measured by surface plasmon resonance.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Chicken double-stranded RNA adenosine deaminase has apparent specificity for Z-DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Effects of methylation on a synthetic polynucleotide: the B--Z transition in poly(dG-m5dC).poly(dG-m5dC).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Nonintercalative binding of proflavin to Z-DNA: structure of a complex between d(5BrC-G-5BrC-G) and proflavin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Transcription is associated with Z-DNA formation in metabolically active permeabilized mammalian cell nuclei

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RNA recognition and translational regulation by a homeodomain protein.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Stabilization of Z DNA in vivo by localized supercoiling.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Identification of a site in glutamate receptor subunits that controls calcium permeability

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Base Sequence Criteria and Cartesian Coordinates For Stable B/Z and B/Z/B Junctions in Relaxed DNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RED2, a brain-specific member of the RNA-specific adenosine deaminase family

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

RNA editing in Drosophila 4f-rnp gene nuclear transcripts by multiple A-to-G conversions.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

Purification of the Xenopus laevis double-stranded RNA adenosine deaminase.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22942

The solution structure of the human ETS1-DNA complex reveals a novel mode of binding and true side chain intercalation

28 November 2018

1 reference

12 December 2020

Structural Requirements for RNA Editing in Glutamate Receptor Pre-mRNAs by Recombinant Double-stranded RNA Adenosine Deaminase

1 reference

12 December 2020

Left-handed DNA in restriction fragments and a recombinant plasmid

1 reference

12 December 2020

Monoclonal antibodies recognize different parts of Z-DNA

1 reference

12 December 2020

Bromination stabilizes poly(dG-dC) in the Z-DNA form under low-salt conditions

1 reference

12 December 2020

The effect of anti-Z-DNA antibodies on the B-DNA-Z-DNA equilibrium

1 reference

12 December 2020

The in-vivo occurrence of Z DNA

1 reference

12 December 2020

Structural determinants of ion flow through recombinant glutamate receptor channels

1 reference

12 December 2020

Structural specificity of peptides in Z-DNA formation and energetics of the peptide-induced B-Z transition of poly(dG-m5dC)

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.94.16.8421

1 reference

1832860

ADS bibcode

1997PNAS...94.8421H

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1832860

1 reference

1 reference

1 reference