The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes (Q24655027)

44

0 references

Richard M. Durbin

48

0 references

David J. Lipman

49

0 references

Tim Hubbard

46

0 references

David Haussler

45

0 references

Manolis Kellis

21

0 references

Jennifer Harrow

2

0 references

Adam Frankish

29

0 references

James Ostell

47

0 references

Catherine Snow

38

0 references

Michael Schuster

24

0 references

Barbara J. Ruef

10

0 references

Clara Amid

26

0 references

Laurens G Wilming

42

0 references

Bronwen Aken

14

0 references

Jane E Loveland

9

0 references

Michael Murphy

Michael R Murphy

33

0 references

Jonathan M Mudge

Jonathan Mudge

32

0 references

Jeena Rajan

Jeena Rajan

35

0 references

Mark Diekhans

5

Mark Diekhans

0 references

Marie-Marthe Suner

12

Marie-Marthe Suner

0 references

Robert Baertsch

16

Robert Baertsch

0 references

Kim D. Pruitt

1

Kim D Pruitt

0 references

Donna R. Maglott

6

Donna R Maglott

0 references

Melissa Landrum

13

Melissa J Landrum

0 references

Charles A. Steward

39

Charles Steward

0 references

Julio Fernandez Banet

17

Julio Fernandez-Banet

0 references

Val Curwen

19

Val Curwen

0 references

Steve Searle

7

Steve Searle

0 references

Craig Wallin

4

Craig Wallin

0 references

Rachel A. Harte

3

Rachel A Harte

0 references

author name string

Catherine M Farrell

8

0 references

Elizabeth Hart

11

0 references

Sarah Ayling

15

0 references

Joshua L Cherry

18

0 references

Michael Dicuccio

20

0 references

Jennifer Lee

22

0 references

Michael F Lin

23

0 references

Andrew Shkeda

25

0 references

Garth Brown

27

0 references

Oksana Dukhanina

28

0 references

Jennifer Hart

30

0 references

Bonnie L Maidak

31

0 references

Terence Murphy

34

0 references

Bhanu Rajput

36

0 references

Lillian D Riddick

37

0 references

David Webb

40

0 references

Janet A Weber

41

0 references

Wenyu Wu

Retrocopy contributions to the evolution of the human genome

43

0 references

language of work or name

English

0 references

publication date

July 2009

0 references

published in

Genome Research

0 references

volume

19

0 references

issue

7

0 references

page(s)

1316-23

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Distinguishing protein-coding and noncoding genes in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Entrez Gene: gene-centered information at NCBI

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

GENCODE: producing a reference annotation for ENCODE

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Automated generation of heuristics for biological sequence comparison

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

The Vertebrate Genome Annotation (Vega) database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Human-mouse alignments with BLASTZ

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Identification of a novel SNF2/SWI2 protein family member, SRCAP, which interacts with CREB-binding protein

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Structural variation in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Sequencing and comparison of yeast species to identify genes and regulatory elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Database resources of the National Center for Biotechnology Information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

NCBI Reference Sequences: current status, policy and new initiatives

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

The UCSC Genome Browser Database: 2008 update

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Database resources of the National Center for Biotechnology Information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

7 April 2017

An overview of Ensembl

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

UCSC genome browser tutorial

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

The HGNC Database in 2008: a resource for the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

The chromatin remodeling protein, SRCAP, is critical for deposition of the histone variant H2A.Z at promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

The Ensembl analysis pipeline

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

Segmental duplications: organization and impact within the current human genome project assembly

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704439

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

28 September 2017

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19498102

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.080531.108

1 reference

548340

548340

1 reference

1 reference

1 reference