Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1 (Q24655392)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

title

Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Christian Schleberger

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Rolf Backofen

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

author name string

Claudia Steglich

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

language of work or name

English

0 references

publication date

22 October 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

number of pages

5

1 reference

based on heuristic

inferred from page(s)

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

volume

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

issue

1

1 reference

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10 February 2020

page(s)

1-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

Regulatory RNAs in bacteria

10 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

MicroRNAs: target recognition and regulatory functions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Translational control and target recognition by Escherichia coli small RNAs in vivo

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Target prediction for small, noncoding RNAs in bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

A rough guide to the non-coding RNA world of Salmonella

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Mechanism of RNA silencing by Hfq-binding small RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Micros for microbes: non-coding regulatory RNAs in bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

6S RNA: a small RNA regulator of transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

mRNA helicase activity of the ribosome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Cloning and characterization of the genes coding for two porins in the unicellular cyanobacterium Synechococcus PCC 6301.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Footprinting mRNA-ribosome complexes with chemical probes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796815

Growth of prochlorococcus, a photosynthetic prokaryote, in the equatorial pacific ocean

28 September 2017

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19850757

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Fast folding and comparison of RNA secondary structures

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP609

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP609

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/RichterSBS10

10 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19850757%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

19850757

2 references