DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer-template junction (Q24657685)

ORCID Public Data File 2021

author name string

Walter A Baase

1

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Davis Jose

2

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Peter H von Hippel

4

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Neil P Johnson

Mfold web server for nucleic acid folding and hybridization prediction

5

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language of work or name

English

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publication date

April 2009

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published in

Nucleic Acids Research

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volume

37

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issue

5

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page(s)

1682-9

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cites work

1 reference

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7 April 2017

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Structure of DNA polymerase I Klenow fragment bound to duplex DNA

7 April 2017

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Direct spectroscopic study of reconstituted transcription complexes reveals that intrinsic termination is driven primarily by thermodynamic destabilization of the nucleic acid framework

7 April 2017

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Mechanism of a genetic glissando: structural biology of indel mutations.

28 September 2017

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Low energy CD of RNA hairpin unveils a loop conformation required for lambdaN antitermination activity

28 September 2017

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Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolo-cytosine

28 September 2017

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Non-B DNA conformations, genomic rearrangements, and human disease

28 September 2017

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Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation of DNA and RNA.

28 September 2017

1 reference

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Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday

28 September 2017

1 reference

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Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: possible relevance to the folding of single-stranded nucleic acids

28 September 2017

1 reference

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Frameshift errors initiated by nucleotide misincorporation

28 September 2017

1 reference

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Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

28 September 2017

1 reference

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Solution structure of a trinucleotide A-T-A bulge loop within a DNA duplex

30 May 2018

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Comparative NMR study of An-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops

30 May 2018

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Mutagenesis by transient misalignment.

30 May 2018

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Evidence for a nonbase stacking effect for the environment-sensitive fluorescent base pyrrolocytosine--comparison with 2-aminopurine

19 June 2018

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Human DNA polymerases lambda and beta show different efficiencies of translesion DNA synthesis past abasic sites and alternative mechanisms for frameshift generation

28 November 2018

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To slip or skip, visualizing frameshift mutation dynamics for error-prone DNA polymerases

28 November 2018

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The frameshift infidelity of human DNA polymerase lambda. Implications for function.

28 November 2018

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Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment

28 November 2018

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Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase

28 November 2018

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12 December 2020

Mapping the conformation of the nucleic acid framework of the T7 RNA polymerase elongation complex in solution using low-energy CD and fluorescence spectroscopy

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12 December 2020

Influence of base stacking and hydrogen bonding on the fluorescence of 2-aminopurine and pyrrolocytosine in nucleic acids

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The interaction of nucleosides in aqueous solution

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release_zfvrbbt3cvcn7mlkhv2rmfy2wa

Identifiers

DOI

10.1093/NAR/GKN1042

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zfvrbbt3cvcn7mlkhv2rmfy2wa

24 November 2022