The Orthology Ontology: development and applications (Q24658623)

1

object named as

Jesualdo Tomás Fernández-Breis

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Ikuo Uchiyama

4

object named as

Ikuo Uchiyama

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author name string

Hirokazu Chiba

2

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María Del Carmen Legaz-García

Journal of Biomedical Semantics

3

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language of work or name

English

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publication date

2016

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published in

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volume

7

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issue

1

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page(s)

34

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cites work

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

7 April 2017

1 reference

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Relations in biomedical ontologies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

The Sequence Ontology: a tool for the unification of genome annotations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

7 April 2017

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Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

7 April 2017

1 reference

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Evolution of antibiotic resistance genes: the DNA sequence of a kanamycin resistance gene from Staphylococcus aureus

7 April 2017

1 reference

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Aber-OWL: a framework for ontology-based data access in biology

7 April 2017

1 reference

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Big data and other challenges in the quest for orthologs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

TreeFam v9: a new website, more species and orthology-on-the-fly

7 April 2017

1 reference

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The NCBI Taxonomy database

7 April 2017

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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

7 April 2017

1 reference

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Initial implementation of a comparative data analysis ontology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

Orthologs, paralogs, and evolutionary genomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

Homology a personal view on some of the problems

7 April 2017

1 reference

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Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data

9 May 2017

1 reference

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The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

28 September 2017

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MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

The Protein Ontology: a structured representation of protein forms and complexes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

OGO: an ontological approach for integrating knowledge about orthology.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4893294

Letter to the editor: SeqXML and OrthoXML: standards for sequence and orthology information

28 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13326-016-0077-X

An ontology to clarify homology-related concepts

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13326-016-0077-X

OOPS! (OntOlogy Pitfall Scanner!)

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13326-016-0077-X

10.1186/S13326-016-0077-X

21 January 2018

Identifiers

DOI

1 reference

journals/biomedsem/Fernandez-Breis16

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1011600876

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1 reference

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PubMed publication ID

27259657

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