Characterization of the RNA motif responsible for the specific interaction of potato spindle tuber viroid RNA (PSTVd) and the tomato protein Virp1 (Q24682495)

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scientific article published on October 1, 2003

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English	Characterization of the RNA motif responsible for the specific interaction of potato spindle tuber viroid RNA (PSTVd) and the tomato protein Virp1	scientific article published on October 1, 2003

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Characterization of the RNA motif responsible for the specific interaction of potato spindle tuber viroid RNA (PSTVd) and the tomato protein Virp1 (English)

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potato spindle tuber viroid

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potato spindle tuber viroid

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10.1093/NAR/GKG777

https://api.crossref.org/works/10.1093/NAR/GKG777

12 March 2024

Michela A. Denti

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Michela Alessandra Denti

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14500815

12 March 2024

3

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Ivan Nikiforov Minkov

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14500815

12 March 2024

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Mariyana Gozmanova

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Mina Tsagris

4

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Martin Tabler

5

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publication date

1 October 2003

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https://academic.oup.com/nar/article-pdf/31/19/5534/3817600/gkg777.pdf

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14500815

12 March 2024

https://europepmc.org/articles/PMC206474

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Europe PubMed Central

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14500815

12 March 2024

https://europepmc.org/articles/PMC206474?pdf=render

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Europe PubMed Central

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14500815

12 March 2024

https://doi.org/10.1093/nar/gkg777

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14500815

12 March 2024

http://academic.oup.com/nar/article-pdf/31/19/5534/3817600/gkg777.pdf

Portable Document Format

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10.1093/NAR/GKG777

https://api.crossref.org/works/10.1093/NAR/GKG777

12 March 2024

Nucleic Acids Research

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31

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19

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5534-43

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Mfold web server for nucleic acid folding and hybridization prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

7 April 2017

Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

7 April 2017

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

7 April 2017

A bromodomain-containing protein from tomato specifically binds potato spindle tuber viroid RNA in vitro and in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

SubViral RNA: a database of the smallest known auto-replicable RNA species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

A chloroplast protein binds a viroid RNA in vivo and facilitates its hammerhead-mediated self-cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

The viroid: biological oddity or evolutionary fossil?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

The bromodomain: a chromatin browser?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

A novel RNA-binding protein from Triturus carnifex identified by RNA-ligand screening with the newt hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Detection and isolation of RNA-binding proteins by RNA-ligand screening of a cDNA expression library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

A spermidine-induced conformational change of long-armed hammerhead ribozymes: ionic requirements for fast cleavage kinetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Rapid and efficient site-directed mutagenesis by single-tube 'megaprimer' PCR method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

A Replication Cycle for Viroids and Other Small Infectious RNA's

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Complexes of viroids with histones and other proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Nucleotide sequence and secondary structure of potato spindle tuber viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Linear oligomeric potato spindle tuber viroid (PSTV) RNAs are accurately processed in vitro to the monomeric circular viroid proper when incubated with a nuclear extract from healthy potato cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 September 2017

Viroid RNA systemic spread may depend on the interaction of a 71-nucleotide bulged hairpin with the host protein VirP1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

30 May 2018

Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

30 May 2018

Cloned single- and double-stranded DNA copies of potato spindle tuber viroid (PSTV) RNA and co-inoculated subgenomic DNA fragments are infectious.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

30 May 2018

Processing of linear longer-than-unit-length potato spindle tuber viroid RNAs into infectious monomeric circular molecules by a G-specific endoribonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

30 May 2018

A naked plant-specific RNA ten-fold smaller than the smallest known viral RNA: the viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 November 2018

Phylogenetic analysis of viroid and viroid-like satellite RNAs from plants: a reassessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 November 2018

The molecular characterization of 16 new sequence variants of Hop stunt viroid reveals the existence of invariable regions and a conserved hammerhead-like structure on the viroid molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 November 2018

The genetic stability of potato spindle tuber viroid (PSTVd) molecular variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 November 2018

Isolates of citrus exocortis viroid recovered by host and tissue selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=206474

28 November 2018

Isolation of viroid-RNA-binding proteins from an expression library with nonradioactive-labeled RNA probes

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Viability and pathogenicity of intersubgroup viroid chimeras suggest possible involvement of the terminal right region in replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Movement of potato spindle tuber viroid reveals regulatory points of phloem-mediated RNA traffic

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A single nucleotide substitution converts potato spindle tuber viroid (PSTVd) from a noninfectious to an infectious RNA for nicotiana tabacum

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of an in vitro ribonucleoprotein complex between a viroid RNA and a phloem protein from cucumber plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of intramolecular chimeras to map molecular determinants of symptom severity of potato spindle tuber viroid (PSTVd)

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Possible involvement of the phloem lectin in long-distance viroid movement

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Infectivity of chimeric viroid transcripts reveals the presence of alternative processing sites in potato spindle tuber viroid

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Agrobacterium-mediated inoculation of PSTVd cDNAs onto tomato reveals the biological effect of apparently lethal mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Citrus exocortis viroid RNA is associated with the largest subunit of RNA polymerase II in tomato in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/14500815

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/NAR/GKG777

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