OriDB: a DNA replication origin database (Q24683354)

1

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Shin-ichiro Hiraga

2

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Prashanth Ak

3

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Craig J Benham

4

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Anne D Donaldson

The UCSC Genome Browser Database: update 2006

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language of work or name

English

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publication date

January 2007

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published in

Nucleic Acids Research

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volume

35

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issue

Database issue

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page(s)

D40-6

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome

7 April 2017

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Database resources of the National Center for Biotechnology Information

7 April 2017

1 reference

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Susceptibility to superhelically driven DNA duplex destabilization: a highly conserved property of yeast replication origins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription

7 April 2017

1 reference

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Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae

7 April 2017

1 reference

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Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

7 April 2017

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

7 April 2017

1 reference

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Histone acetylation regulates the time of replication origin firing

7 April 2017

1 reference

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The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Architecture of the yeast origin recognition complex bound to origins of DNA replication

7 April 2017

1 reference

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A yeast chromosomal origin of DNA replication defined by multiple functional elements

7 April 2017

1 reference

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Genome-wide map of nucleosome acetylation and methylation in yeast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The localization of replication origins on ARS plasmids in S. cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

A genomic view of eukaryotic DNA replication.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Regulation of early events in chromosome replication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Ku complex controls the replication time of DNA in telomere regions.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Ease of DNA unwinding is a conserved property of yeast replication origins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The arrest of replication forks in the rDNA of yeast occurs independently of transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Localization of a DNA replication origin and termination zone on chromosome III of Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Isolation and characterisation of a yeast chromosomal replicator

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Genome-wide identification of replication origins in yeast by comparative genomics.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

The ease of DNA unwinding as a determinant of initiation at yeast replication origins

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1781122

Nucleosomes positioned by ORC facilitate the initiation of DNA replication.

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL758

Replication dynamics of the yeast genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL758

Mapping of early firing origins on a replication profile of budding yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL758

Branch Migrating Sister Chromatid Junctions Form at Replication Origins through Rad51/Rad52-Independent Mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL758

The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI

21 January 2018

1 reference

12 December 2020

Replication profile of Saccharomyces cerevisiae chromosome VI

1 reference

12 December 2020

The in vivo replication origin of the yeast 2 microns plasmid

1 reference

12 December 2020

Analysis of replication origin function on chromosome III of Saccharomyces cerevisiae

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL758

1 reference

journals/nar/NieduszynskiHABD07

3902416

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

3902416

1 reference

1 reference

1 reference