Computational and experimental identification of novel human imprinted genes (Q24684684)

6

object named as

Alexander J Hartemink

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author name string

Philippe P Luedi

1

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Fred S Dietrich

2

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Jennifer R Weidman

3

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Jason M Bosko

4

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Randy L Jirtle

Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

5

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language of work or name

English

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publication date

December 2007

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published in

Genome Research

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volume

17

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issue

12

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page(s)

1723-30

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cites work

1 reference

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Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8

7 April 2017

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Cloning, expression and chromosomal location of NKX6B TO 10Q26, a region frequently deleted in brain tumors

7 April 2017

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Improved tools for biological sequence comparison

7 April 2017

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Parental imprinting of the mouse H19 gene

7 April 2017

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The UCSC Genome Browser Database

7 April 2017

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The role of HOX genes in human implantation

7 April 2017

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A new imprinted cluster on the human chromosome 7q21-q31, identified by human-mouse monochromosomal hybrids

7 April 2017

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Genome imprinting regulated by the mouse Polycomb group protein Eed

7 April 2017

1 reference

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An imprinted PEG1/MEST antisense expressed predominantly in human testis and in mature spermatozoa

7 April 2017

1 reference

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Serum response factor is essential for mesoderm formation during mouse embryogenesis

7 April 2017

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Monoallelic expression of the human H19 gene

7 April 2017

1 reference

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Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

7 April 2017

1 reference

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Environmental epigenomics and disease susceptibility

7 April 2017

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A fine-scale map of recombination rates and hotspots across the human genome

7 April 2017

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Genomic imprinting: parental influence on the genome

7 April 2017

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Cytosine methylation and the ecology of intragenomic parasites

7 April 2017

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The silence of genes. Is genomic imprinting the software of evolution or just a battleground for gender conflict?

7 April 2017

1 reference

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The Controlling Element in Sex Chromosome Behavior in Sciara

28 September 2017

1 reference

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Cellular memory and dynamic regulation of polycomb group proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Limited evolutionary conservation of imprinting in the human placenta

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Hox cofactors in vertebrate development

28 September 2017

1 reference

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Insertional mutagenesis identifies genes that promote the immortalization of primary bone marrow progenitor cells

28 September 2017

1 reference

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Plakophilin 3 oncogene as prognostic marker and therapeutic target for lung cancer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

A census of mammalian imprinting.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Genome-wide prediction of imprinted murine genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

A genomewide scan of male sexual orientation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

The 2P-domain K+ channels: role in apoptosis and tumorigenesis

28 September 2017

1 reference

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The potential role of gene duplications in the evolution of imprinting mechanisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Imprinting evolution and the price of silence.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Serum response factor is required for immediate-early gene activation yet is dispensable for proliferation of embryonic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Distribution analysis of human two pore domain potassium channels in tissues of the central nervous system and periphery

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Natural selection and the function of genome imprinting: beyond the silenced minority

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Positional cloning and characterisation of the human DLGAP2 gene and its exclusion in progressive epilepsy with mental retardation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Growth and differentiation of C2 myogenic cells are dependent on serum response factor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Methylation and imprinting: from host defense to gene regulation?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

An E-box-mediated increase in cad transcription at the G1/S-phase boundary is suppressed by inhibitory c-Myc mutants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Serum response factor p67SRF is expressed and required during myogenic differentiation of both mouse C2 and rat L6 muscle cell lines

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Sp1 elements protect a CpG island from de novo methylation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

The origin of personality

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Parental imprinting of the mouse insulin-like growth factor II gene.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Sparse multinomial logistic regression: fast algorithms and generalization bounds.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Dlx5, the mouse homologue of the human-imprinted DLX5 gene, is biallelically expressed in the mouse brain.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Genome-wide scan of bipolar disorder in 65 pedigrees: supportive evidence for linkage at 8q24, 18q22, 4q32, 2p12, and 13q12

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

A Genome-Wide Screen for Normally Methylated Human CpG Islands That Can Identify Novel Imprinted Genes

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

Human GRB10 is imprinted and expressed from the paternal and maternal allele in a highly tissue- and isoform-specific fashion.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099581

High density deletion mapping of bladder cancer localizes the putative tumor suppressor gene between loci D8S504 and D8S264 at chromosome 8p23.3.

28 November 2018

1 reference

12 December 2020

Tandem pore domain K(+)-channel TASK-3 (KCNK9) and idiopathic absence epilepsies

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Bipartite determinants of DNA-binding specificity of plant basic leucine zipper proteins

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Homologous association of oppositely imprinted chromosomal domains

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12 December 2020

The distinguishing sequence characteristics of mouse imprinted genes

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12 December 2020

Mapping of genes predisposing to idiopathic generalized epilepsy

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12 December 2020

Identifiers

DOI

10.1101/GR.6584707

1 reference

3023668

3023668

1 reference

1 reference

1 reference