Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex (Q24805113)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15788747%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex (English)

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10 January 2020

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2

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10 January 2020

author name string

Miha Plevnik

series ordinal

1

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10 January 2020

Janez Plavec

series ordinal

3

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10 January 2020

language of work or name

English

0 references

publication date

23 March 2005

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10 January 2020

published in

Nucleic Acids Research

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10 January 2020

volume

33

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10 January 2020

issue

6

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10 January 2020

page(s)

1749-1759

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Structure of a B-DNA dodecamer: conformation and dynamics

10 January 2020

cites work

1 reference

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Solution structures of stem-loop RNAs that bind to the two N-terminal RNA-binding domains of nucleolin

7 April 2017

1 reference

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A novel RNA motif based on the structure of unusually stable 2',5'-linked r(UUCG) loops

7 April 2017

1 reference

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Crystal structure and improved antisense properties of 2'-O-(2-methoxyethyl)-RNA

7 April 2017

1 reference

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Diversity-oriented solid-phase synthesis and biological evaluation of oligonucleotide hairpins as HIV-1 RT RNase H inhibitors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex

28 September 2017

1 reference

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Tuning of conformational preorganization in model 2',5'- and 3',5'-linked oligonucleotides by 3'- and 2'-O-methoxyethyl modification

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

van't Hoff enthalpies without baselines.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Structural motifs in RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Structural characteristics of 2'-O-(2-methoxyethyl)-modified nucleic acids from molecular dynamics simulations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Comparative spectroscopic, calorimetric, and computational studies of nucleic acid complexes with 2',5"-versus 3',5"-phosphodiester linkages

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Stereoelectronic effects of deoxyribose O4' on DNA conformation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Recognition and catalysis in nucleic acid chemistry

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

The anatomy of A-, B-, and Z-DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

X-ray structure of a dinucleoside monophosphate A2'p5'C that contains a 2'-5' link found in (2'-5')oligo(A)s induced by interferons: single-stranded helical conformation of 2'-5'-linked oligonucleotides

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Duplex-hairpin transitions in DNA: NMR studies on CGCGTATACGCG.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Molecular structure of cyclic deoxydiadenylic acid at atomic resolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Conformational studies of (2'-5') polynucleotides: theoretical computations of energy, base morphology, helical structure, and duplex formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Association of 2'-5' oligoribonucleotides

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Hydrolytic stability of helical RNA: a selective advantage for the natural 3',5'-bond

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Kinetic and thermodynamic characterization of DNA duplex-hairpin interconversion for two DNA decamers: d(CAACGGGTTG) and d(CAACCCGTTG).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Remarkable stability of hairpins containing 2',5'-linked RNA loops

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

NMR structure of a 2',5' RNA favors A type duplex with compact C2'endo nucleotide repeat

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Conformational studies of antisense DNA by PFG NMR.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1069515

Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): evidence for hairpin formation

28 November 2018

1 reference

12 December 2020

Premelting and melting transitions in the d(CGCGAATTCGCG) self-complementary duplex in solution

1 reference

12 December 2020

Measurement of diffusion constants for nucleic acids by NMR

1 reference

12 December 2020

Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG)

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI318

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15788747%20AND%20SRC:MED&resulttype=core&format=json

release_367nmqhc6ncddbw27f6aq4ko3a

10 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/367nmqhc6ncddbw27f6aq4ko3a

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15788747%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

15788747

1 reference