Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup. (Q24805851)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15843683%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

title

Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup (English)

1 reference

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11 January 2020

1

1 reference

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11 January 2020

Yi Zhang

series ordinal

2

1 reference

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11 January 2020

author name string

Zhijie Li

series ordinal

1

1 reference

PubMed publication ID

15843683

2 July 2017

Yi Zhang

series ordinal

2

1 reference

PubMed publication ID

15843683

2 July 2017

language of work or name

English

0 references

publication date

20 April 2005

1 reference

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11 January 2020

published in

Nucleic Acids Research

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11 January 2020

volume

33

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11 January 2020

issue

7

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11 January 2020

page(s)

2118-2128

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Concerted folding of a Candida ribozyme into the catalytically active structure posterior to a rapid RNA compaction

11 January 2020

cites work

1 reference

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Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

7 April 2017

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

7 April 2017

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Exploring the folding landscape of a structured RNA

7 April 2017

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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

7 April 2017

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Frequent use of the same tertiary motif by self-folding RNAs

7 April 2017

1 reference

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 April 2017

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A preorganized active site in the crystal structure of the Tetrahymena ribozyme

7 April 2017

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Crystal structure of a hepatitis delta virus ribozyme

7 April 2017

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 April 2017

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Crystal structure of a phage Twort group I ribozyme-product complex

7 April 2017

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Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site

7 April 2017

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7 April 2017

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Self-splicing of group I introns

7 April 2017

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Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

7 April 2017

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Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

7 April 2017

1 reference

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Fast formation of the P3-P7 pseudoknot: a strategy for efficient folding of the catalytically active ribozyme

7 April 2017

1 reference

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Crystal structure of a self-splicing group I intron with both exons

28 September 2017

1 reference

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Folding mechanisms of group I ribozymes: role of stability and contact order

28 September 2017

1 reference

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28 September 2017

1 reference

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Folding of the group I intron ribozyme from the 26S rRNA gene of Candida albicans

28 September 2017

1 reference

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Beyond kinetic traps in RNA folding

28 September 2017

1 reference

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Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction

28 September 2017

1 reference

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Ribozyme structures and mechanisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1083426

Metal ions in ribozyme folding and catalysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1083426

The P5abc peripheral element facilitates preorganization of the tetrahymena group I ribozyme for catalysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1083426

28 September 2017

1 reference

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Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes

28 September 2017

1 reference

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Long-range interaction between the P2.1 and P9.1 peripheral domains of the Tetrahymena ribozyme.

28 September 2017

1 reference

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Correlation between the presence of a self-splicing intron in the 25S rDNA of C.albicans and strains susceptibility to 5-fluorocytosine

28 September 2017

1 reference

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RNA chaperones and the RNA folding problem

28 September 2017

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Involvement of a GNRA tetraloop in long-range RNA tertiary interactions

28 September 2017

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Structural conventions for group I introns

28 September 2017

1 reference

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Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review

28 September 2017

1 reference

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Crystal structure of a group I intron splicing intermediate

28 September 2017

1 reference

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A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta).

30 May 2018

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Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron

30 May 2018

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Base-pairing interactions involving the 5' and 3'-terminal nucleotides of group II self-splicing introns

30 May 2018

1 reference

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Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

30 May 2018

1 reference

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The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1083426

A Group I intron in the nuclear small subunit rRNA gene of Cryptendoxyla hypophloia, an ascomycetous fungus: evidence for a new major class of Group I introns

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1083426

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15843683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A story: unpaired adenosine bases in ribosomal RNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15843683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15843683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI517

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15843683%20AND%20SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

11 January 2020

4714675

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4714675

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15843683%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

PubMed publication ID

15843683

1 reference