Predicting functional sites with an automated algorithm suitable for heterogeneous datasets (Q24810161)

3 July 2017

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title

Predicting functional sites with an automated algorithm suitable for heterogeneous datasets (English)

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3 July 2017

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David La

1

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3 July 2017

Dennis R Livesay

series ordinal

2

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3 July 2017

language of work or name

English

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publication date

13 May 2005

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3 July 2017

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3 July 2017

volume

6

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3 July 2017

issue

1

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page(s)

116

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MINER: software for phylogenetic motif identification

3 July 2017

cites work

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Automatic annotation of protein motif function with Gene Ontology terms

7 April 2017

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7 April 2017

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ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

7 April 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 April 2017

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Crystal structure of triosephosphate isomerase complexed with 2-phosphoglycolate at 0.83-A resolution

7 April 2017

1 reference

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Structural determinants for ligand binding and catalysis of triosephosphate isomerase

7 April 2017

1 reference

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Solution-state NMR investigations of triosephosphate isomerase active site loop motion: ligand release in relation to active site loop dynamics

7 April 2017

1 reference

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Identification of catalytically important residues in the active site of Escherichia coli transaldolase

7 April 2017

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tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding

7 April 2017

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The crystal structure of a hyperthermophilic archaeal TATA-box binding protein

7 April 2017

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LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions

7 April 2017

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Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

7 April 2017

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Evolutionary conservation of the active site of soluble inorganic pyrophosphatase

7 April 2017

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An evolutionary trace method defines binding surfaces common to protein families

7 April 2017

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The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM-barrel proteins

7 April 2017

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Searching for functional sites in protein structures.

28 September 2017

1 reference

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Prediction of protein function from protein sequence and structure

28 September 2017

1 reference

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Recent improvements to the PROSITE database

28 September 2017

1 reference

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Finding important sites in protein sequences

28 September 2017

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Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

28 September 2017

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ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

28 September 2017

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Motifs and structural fold of the cofactor binding site of human glutamate decarboxylase

28 September 2017

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A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

28 September 2017

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Anatomy of a conformational change: hinged "lid" motion of the triosephosphate isomerase loop.

28 September 2017

1 reference

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Crystallographic binding studies with triosephosphate isomerases: Conformational changes induced by substrate and substrate-analogues

28 September 2017

1 reference

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Predicting protein functional sites with phylogenetic motifs

28 September 2017

1 reference

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A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids

30 May 2018

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Inactivation of triosephosphate isomerase from Trypanosoma cruzi by an agent that perturbs its dimer interface

30 May 2018

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Using motif-based methods in multiple genome analyses: a case study comparing orthologous mesophilic and thermophilic proteins

28 November 2018

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The time scale of the catalytic loop motion in triosephosphate isomerase

28 November 2018

1 reference

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Structural clusters of evolutionary trace residues are statistically significant and common in proteins

28 November 2018

1 reference

12 December 2020

An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures

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12 December 2020

Automatic methods for predicting functionally important residues

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12 December 2020

Conservation of electrostatic properties within enzyme families and superfamilies

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12 December 2020

Sequence analysis reveals how G protein-coupled receptors transduce the signal to the G protein

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12 December 2020

Mutations at four active site residues of biotin carboxylase abolish substrate-induced synergism by biotin

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12 December 2020

Identifiers

DOI

10.1186/1471-2105-6-116

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3 July 2017

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1047108131

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PMC publication ID

1142304

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1 reference