Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification (Q24810551)

5 July 2017

title

Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification (English)

1 reference

5 July 2017

Wen-Hsiung Li

3

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author name string

Li-Hsieh Lin

series ordinal

1

1 reference

5 July 2017

Hsiao-Ching Lee

series ordinal

2

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5 July 2017

Bor-Sen Chen

series ordinal

4

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5 July 2017

language of work or name

English

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publication date

18 October 2005

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5 July 2017

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5 July 2017

volume

6

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5 July 2017

issue

1

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page(s)

258

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Identifying combinatorial regulation of transcription factors and binding motifs

5 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

7 April 2017

1 reference

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Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Transcriptional regulatory networks in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

G1 transcription factors are differentially regulated in Saccharomyces cerevisiae by the Swi6-binding protein Stb1

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Mcm1p-induced DNA bending regulates the formation of ternary transcription factor complexes.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Regulation of transcription at the Saccharomyces cerevisiae start transition by Stb1, a Swi6-binding protein

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Distinct regions of the Swi5 and Ace2 transcription factors are required for specific gene activation

7 April 2017

1 reference

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NDD1, a high-dosage suppressor of cdc28-1N, is essential for expression of a subset of late-S-phase-specific genes in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

A novel Mcm1-dependent element in the SWI4, CLN3, CDC6, and CDC47 promoters activates M/G1-specific transcription

7 April 2017

1 reference

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The a-factor pheromone of Saccharomyces cerevisiae is essential for mating

7 April 2017

1 reference

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

7 April 2017

1 reference

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Precision and functional specificity in mRNA decay

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Serial regulation of transcriptional regulators in the yeast cell cycle

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation

7 April 2017

1 reference

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Inferring gene regulatory relationships by combining target-target pattern recognition and regulator-specific motif examination.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Interacting models of cooperative gene regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Inferring quantitative models of regulatory networks from expression data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Identifying cooperativity among transcription factors controlling the cell cycle in yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Role of Swi4 in cell cycle regulation of CLN2 expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Cell cycle-regulated transcription of the CLB2 gene is dependent on Mcm1 and a ternary complex factor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

A central role for SWI6 in modulating cell cycle Start-specific transcription in yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Quantitative functional interrelations within the cis-regulatory system of the S. purpuratus Endo16 gene.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

A connectionist model of development

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Predicting gene expression from sequence

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283971

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16232312

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16232312

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-6-258

1 reference

5 July 2017

DBLP publication ID

journals/bmcbi/LinLLC05

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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5 July 2017

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