A deoxyribozyme that synthesizes 2',5'-branched RNA with any branch-site nucleotide (Q24810581)

3 July 2017

title

A deoxyribozyme that synthesizes 2',5'-branched RNA with any branch-site nucleotide (English)

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3 July 2017

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Elizabeth D Pratico

1

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3 July 2017

Yangming Wang

series ordinal

2

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3 July 2017

Scott K Silverman

series ordinal

3

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3 July 2017

language of work or name

English

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publication date

20 June 2005

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3 July 2017

published in

Nucleic Acids Research

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3 July 2017

volume

33

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3 July 2017

issue

11

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3 July 2017

page(s)

3503-3512

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Mfold web server for nucleic acid folding and hybridization prediction

3 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Control of branch-site choice by a group II intron

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

7 April 2017

DNA in a material world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A DNA enzyme that cleaves RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Synthesis of small RNAs using T7 RNA polymerase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Zn2+-dependent deoxyribozymes that form natural and unnatural RNA linkages

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Deoxyribozymes: DNA catalysts for bioorganic chemistry.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Recent advances in the high-speed solid phase synthesis of RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Structure-function correlations derived from faster variants of a RNA ligase deoxyribozyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Superior 5' homogeneity of RNA from ATP-initiated transcription under the T7 phi 2.5 promoter

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

At the crossroads of chemistry, biology, and materials: structural DNA nanotechnology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Synthesis of adenosine derivatives as transcription initiators and preparation of 5′ fluorescein- and biotin-labeled RNA through one-step in vitro transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A 5'-3' long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Deoxyribozymes: new activities and new applications

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A new approach to the synthesis of branched and branched cyclic oligoribonucleotides

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Mechanism and utility of an RNA-cleaving DNA enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A general purpose RNA-cleaving DNA enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Assembly of the mitochondrial membrane system. Structure and nucleotide sequence of the gene coding for subunit 1 of yeast cytochrme oxidase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Solid-phase synthesis of branched oligoribonucleotides related to messenger RNA splicing intermediates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Parallel selections in vitro reveal a preference for 2'-5' RNA ligation upon deoxyribozyme-mediated opening of a 2',3'-cyclic phosphate

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A deoxyribozyme that forms a three-helix-junction complex with its RNA substrates and has general RNA branch-forming activity

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

An evaluation of detection methods for large lariat RNAs

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

A DNA enzyme that mimics the first step of RNA splicing

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

RNA branching and debranching in the yeast retrovirus-like element Ty1.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Molecular biology. Ring around the retroelement

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Characterization of deoxyribozymes that synthesize branched RNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Optimization and generality of a small deoxyribozyme that ligates RNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

Biochemistry and structural DNA nanotechnology: an evolving symbiotic relationship.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1153712

[10] Using DNAzylnes to cut, process, and map RNA molecules for structural studies or modification

28 November 2018

1 reference

12 December 2020

Directing the outcome of deoxyribozyme selections to favor native 3'-5' RNA ligation

1 reference

12 December 2020

RNA oligonucleotide synthesis via 5'-silyl-2'-orthoester chemistry

1 reference

12 December 2020

RNA lariat debranching enzyme

1 reference

12 December 2020

Deoxyribozymes with 2'-5' RNA ligase activity

1 reference

12 December 2020

In Vitro Evolution of an RNA-Cleaving DNA Enzyme into an RNA Ligase Switches the Selectivity from 3‘−5‘ to 2‘−5‘

1 reference

12 December 2020

Deoxyribozymes that synthesize branched and lariat RNA

1 reference

12 December 2020

Ty elements transpose through an RNA intermediate

1 reference

12 December 2020

A self-splicing RNA excises an intron lariat

1 reference

12 December 2020

Multiple exon-binding sites in class II self-splicing introns

1 reference

12 December 2020

Yeast lariat debranching enzyme. Substrate and sequence specificity

1 reference

12 December 2020

Rational modification of a selection strategy leads to deoxyribozymes that create native 3'-5' RNA linkages

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI656

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3 July 2017

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