Identification of novel restriction endonuclease-like fold families among hypothetical proteins (Q24811792)

3 July 2017

title

Identification of novel restriction endonuclease-like fold families among hypothetical proteins (English)

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3 July 2017

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4

Nick V Grishin

1 reference

3 July 2017

3

Leszek Rychlewski

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3 July 2017

2

Krzysztof Ginalski

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3 July 2017

Lisa N Kinch

1

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3 July 2017

language of work or name

English

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publication date

22 June 2005

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3 July 2017

published in

Nucleic Acids Research

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3 July 2017

volume

33

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3 July 2017

issue

11

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3 July 2017

page(s)

3598-3605

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The Pfam protein families database

3 July 2017

cites work

1 reference

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7 April 2017

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7 April 2017

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Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold

7 April 2017

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X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: similarity between its endonuclease domain and restriction enzymes

7 April 2017

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7 April 2017

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Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition

7 April 2017

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Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I

7 April 2017

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Unexpected structural diversity in DNA recombination: the restriction endonuclease connection

7 April 2017

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Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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A yeast gene, MGS1, encoding a DNA-dependent AAA(+) ATPase is required to maintain genome stability.

7 April 2017

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Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks

7 April 2017

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Differential regulation of Rad18 through Rad6-dependent mono- and polyubiquitination

7 April 2017

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7 April 2017

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Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging

7 April 2017

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28 September 2017

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Crystallographic and Bioinformatic Studies on Restriction Endonucleases: Inference of Evolutionary Relationships in the &#x201C;Midnight Zone&#x201D; of Homology

28 September 2017

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Functional cooperation between exonucleases and endonucleases--basis for the evolution of restriction enzymes

28 September 2017

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28 September 2017

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Catalytic mechanisms of restriction and homing endonucleases

28 September 2017

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Involvement of vertebrate polkappa in Rad18-independent postreplication repair of UV damage

28 September 2017

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A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis

28 September 2017

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28 September 2017

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SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

28 September 2017

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Type II restriction endonucleases: structural, functional and evolutionary relationships

28 September 2017

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Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements

28 September 2017

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Catalytic and binding mutants of the junction-resolving enzyme endonuclease I of bacteriophage t7: role of acidic residues

28 September 2017

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Protein folds and families: sequence and structure alignments

28 September 2017

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Isolation and characterization of three Streptococcus pneumoniae transformation-specific loci by use of a lacZ reporter insertion vector

28 September 2017

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Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1157100

Duplication of the pepF gene and shuffling of DNA fragments on the lactose plasmid of Lactococcus lactis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1157100

A simple tool to search for sequence motifs that are conserved in BLAST outputs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1157100

Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1157100

Genes involved in the determination of the rate of inversions at short inverted repeats

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1157100

PCMA: fast and accurate multiple sequence alignment based on profile consistency.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1157100

Identification of the nuclease active site in the multifunctional RecBCD enzyme by creation of a chimeric enzyme

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15972856

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mutational analysis of the Pyrococcus furiosus holliday junction resolvase hjc revealed functionally important residues for dimer formation, junction DNA binding, and cleavage activities

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15972856

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI676

1 reference

3 July 2017

0 references

1 reference