SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment. (Q24812461)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

title

SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

protein structure prediction

13 January 2020

main subject

protein structure

0 references

0 references

author

Vladimir Potapov

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

author name string

Vladimir Sobolev

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Eran Eyal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Sergey Gerzon

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Mariana Babor

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Jaime Prilusky

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Marvin Edelman

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

language of work or name

English

0 references

publication date

1 July 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

volume

33

1 reference

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13 January 2020

issue

Web Server issue

1 reference

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13 January 2020

page(s)

W39-43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

13 January 2020

cites work

1 reference

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7 April 2017

The Protein Data Bank

1 reference

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The CCP4 suite: programs for protein crystallography

7 April 2017

1 reference

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

The Protein Data Bank: a computer-based archival file for macromolecular structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Homology modeling, model and software evaluation: three related resources

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Knowledge-based protein secondary structure assignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

A graph-theory algorithm for rapid protein side-chain prediction

7 April 2017

1 reference

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Automated analysis of interatomic contacts in proteins

7 April 2017

1 reference

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The modular architecture of protein-protein binding interfaces

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Benzoxepin-derived estrogen receptor modulators: a novel molecular scaffold for the estrogen receptor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Sparsely populated folding intermediates of the Fyn SH3 domain: matching native-centric essential dynamics and experiment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Domain swapping is a consequence of minimal frustration

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Protein--protein recognition: juxtaposition of domain and interface cores in immunoglobulins and other sandwich-like proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

MONSTER: inferring non-covalent interactions in macromolecular structures from atomic coordinate data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

iMolTalk: an interactive, internet-based protein structure analysis server.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Discrimination of native protein structures using atom-atom contact scoring

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

PDBsum: a Web-based database of summaries and analyses of all PDB structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

WebMol--a Java-based PDB viewer.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

GRASS: a server for the graphical representation and analysis of structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Molecular docking using surface complementarity.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Least-squares fitting of two 3-d point sets.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Network Analysis of Protein Structures Identifies Functional Residues

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Using networks to identify fine structural differences between functionally distinct protein states

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

Modeling the quinone-B binding site of the photosystem-II reaction center using notions of complementarity and contact-surface between atoms.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160159

RankViaContact: ranking and visualization of amino acid contacts

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MutaProt: a web interface for structural analysis of point mutations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI398

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/SobolevEGPBPE05

13 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

OpenCitations bibliographic resource ID

28 January 2021

2258249

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2258249

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980496%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

PubMed publication ID

15980496

1 reference