ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences (Q24812681)

5 July 2017

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title

ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences (English)

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5 July 2017

3

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5 July 2017

Paola Bonizzoni

1

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author name string

Raffaella Rizzi

series ordinal

2

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PubMed ID

16207377

5 July 2017

language of work or name

English

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publication date

5 October 2005

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5 July 2017

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5 July 2017

6

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5 July 2017

1

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page(s)

244

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https://scigraph.springernature.com/pub.10.1186/1471-2105-6-244

5 July 2017

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cites work

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Initial sequencing and analysis of the human genome

7 April 2017

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RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

7 April 2017

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7 April 2017

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A genomic view of alternative splicing

7 April 2017

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Alternative splicing: increasing diversity in the proteomic world

7 April 2017

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

7 April 2017

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ECgene: genome-based EST clustering and gene modeling for alternative splicing

7 April 2017

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The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome

28 September 2017

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ESTGenes: alternative splicing from ESTs in Ensembl

28 September 2017

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Genome wide identification and classification of alternative splicing based on EST data

28 September 2017

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ASD: the Alternative Splicing Database.

28 September 2017

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Low conservation of alternative splicing patterns in the human and mouse genomes.

28 September 2017

1 reference

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ASAP: the Alternative Splicing Annotation Project

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

Computational analysis of alternative splicing using EST tissue information

28 September 2017

1 reference

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Genome-wide detection of tissue-specific alternative splicing in the human transcriptome

28 September 2017

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Alternative splicing: multiple control mechanisms and involvement in human disease

28 September 2017

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28 September 2017

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A computational scan for U12-dependent introns in the human genome sequence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs

28 September 2017

1 reference

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SpliceDB: database of canonical and non-canonical mammalian splice sites

28 September 2017

1 reference

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Analysis of canonical and non-canonical splice sites in mammalian genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

A fast and sensitive algorithm for aligning ESTs to the human genome.

28 September 2017

1 reference

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Genome-wide detection of alternative splicing in expressed sequences using partial order multiple sequence alignment graphs.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

Theoretical analysis of alternative splice forms using computational methods.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

Splicing graphs and EST assembly problem

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

EST comparison indicates 38% of human mRNAs contain possible alternative splice forms.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1276783

28 November 2018

Identifiers

DOI

10.1186/1471-2105-6-244

1 reference

journals/bmcbi/BonizzoniRP05

5 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

5 July 2017

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PubMed ID

16207377