P-Match: transcription factor binding site search by combining patterns and weight matrices (Q24812908)

3 July 2017

P-Match: transcription factor binding site search by combining patterns and weight matrices (English)

1 reference

3 July 2017

D S Chekmenev

1

1 reference

3 July 2017

C Haid

series ordinal

2

1 reference

3 July 2017

A E Kel

series ordinal

3

1 reference

3 July 2017

language of work or name

English

0 references

publication date

1 July 2005

1 reference

3 July 2017

Nucleic Acids Research

1 reference

3 July 2017

33

1 reference

3 July 2017

Web Server issue

1 reference

3 July 2017

W432-7

1 reference

DNA binding sites: representation and discovery

3 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

TRANSFAC: transcriptional regulation, from patterns to profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Deriving an ontology for human gene expression sources from the CYTOMER database on human organs and cell types

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

TRANSPATH: an integrated database on signal transduction and a tool for array analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

TRANSCompel: a database on composite regulatory elements in eukaryotic genes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Discovery and modeling of transcriptional regulatory regions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Regulatory elements and expression profiles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Transcription regulatory region analysis using signal detection and fuzzy clustering

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Computer tool FUNSITE for analysis of eukaryotic regulatory genomic sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

Genome-wide analysis of CREB target genes reveals a core promoter requirement for cAMP responsiveness

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

AliBaba2: context specific identification of transcription factor binding sites.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160202

SIGNAL SCAN 4.0: additional databases and sequence formats

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980505

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980505

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI441

1 reference

journals/nar/ChekmenevHK05

3 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

0 references

1 reference