PatchDock and SymmDock: servers for rigid and symmetric docking (Q24813335)

3 July 2017

PatchDock and SymmDock: servers for rigid and symmetric docking (English)

1 reference

3 July 2017

3

Ruth Nussinov

1 reference

PubMed ID

15980490

3 July 2017

Dina Schneidman-Duhovny

series ordinal

1

object named as

Dina Schneidman-Duhovny

0 references

Haim Wolfson

series ordinal

4

object named as

Haim J Wolfson

1 reference

3 July 2017

Yuval Inbar

2

1 reference

PubMed ID

15980490

3 July 2017

language of work or name

English

0 references

publication date

1 July 2005

1 reference

3 July 2017

Nucleic Acids Research

1 reference

3 July 2017

33

1 reference

3 July 2017

W363-7

1 reference

3 July 2017

Web Server issue

1 reference

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

3 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Modelling protein docking using shape complementarity, electrostatics and biochemical information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Development and validation of a genetic algorithm for flexible docking

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Solvent-accessible surfaces of proteins and nucleic acids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

ClusPro: a fully automated algorithm for protein-protein docking

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

A combinatorial approach to protein docking with flexible side chains

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

QSD quadratic shape descriptors. 2. Molecular docking using quadratic shape descriptors (QSDock).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

A systematic study of low-resolution recognition in protein--protein complexes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Shape complementarity at protein-protein interfaces

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

A geometric approach to macromolecule-ligand interactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Determination of atomic desolvation energies from the structures of crystallized proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

"Soft docking": matching of molecular surface cubes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

New algorithm to model protein-protein recognition based on surface complementarity. Applications to antibody-antigen docking

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Geometry-based flexible and symmetric protein docking.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Approaching the CAPRI challenge with an efficient geometry-based docking.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Construction of molecular assemblies via docking: modeling of tetramers with D2 symmetry.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

A protein-protein docking benchmark.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Docking unbound proteins using shape complementarity, desolvation, and electrostatics.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Protein docking using a genetic algorithm.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Scoring docked conformations generated by rigid-body protein-protein docking.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Modeling supra-molecular helices: extension of the molecular surface recognition algorithm and application to the protein coat of the tobacco mosaic virus

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

A geometry-based suite of molecular docking processes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Protein docking for low-resolution structures.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160241

Shape complementarity at the hemoglobin alpha 1 beta 1 subunit interface

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980490

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Main-chain complementarity in protein-protein recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980490

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI481

1 reference

journals/nar/Schneidman-DuhovnyINW05

3 July 2017

1 reference

DBLP Dataset 2021-01-02

OpenCitations bibliographic resource ID

28 January 2021

249751

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

PubMed ID

15980490