GENSTYLE: exploration and analysis of DNA sequences with genomic signature. (Q24813413)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980524%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

title

GENSTYLE: exploration and analysis of DNA sequences with genomic signature (English)

1 reference

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13 January 2020

5

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13 January 2020

author name string

Bernard Fertil

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980524%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Matthieu Massin

2

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13 January 2020

Sylvain Lespinats

3

1 reference

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13 January 2020

Caroline Devic

4

1 reference

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13 January 2020

Alain Giron

6

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13 January 2020

language of work or name

English

0 references

publication date

1 July 2005

1 reference

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13 January 2020

published in

Nucleic Acids Research

1 reference

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13 January 2020

volume

33

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13 January 2020

issue

Web Server issue

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13 January 2020

page(s)

W512-5

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A new computational method for the detection of horizontal gene transfer events

13 January 2020

cites work

1 reference

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Detection and characterization of horizontal transfers in prokaryotes using genomic signature

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Pervasive properties of the genomic signature

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

The spectrum of genomic signatures: from dinucleotides to chaos game representation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Application of tetranucleotide frequencies for the assignment of genomic fragments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Biased biological functions of horizontally transferred genes in prokaryotic genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Evolutionary implications of microbial genome tetranucleotide frequency biases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

A genomic schism in birds revealed by phylogenetic analysis of DNA strings

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

On surrogate methods for detecting lateral gene transfer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Analysis of genomic sequences by Chaos Game Representation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Horizontal gene transfer in bacterial and archaeal complete genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Probabilistic and statistical properties of words: an overview

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Dinucleotide relative abundance extremes: a genomic signature

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Mono- through hexanucleotide composition of the Escherichia coli genome: a Markov chain analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Chaos game representation of gene structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Reconciling the many faces of lateral gene transfer.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Comparative DNA analysis across diverse genomes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

Mathematical characterization of Chaos Game Representation. New algorithms for nucleotide sequence analysis

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160249

A novel bioinformatic strategy for unveiling hidden genome signatures of eukaryotes: self-organizing map of oligonucleotide frequency

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980524

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Entropic profiles of DNA sequences through chaos-game-derived images

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15980524

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI489

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980524%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/FertilMLDDG05

13 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980524%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

1 reference