Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort (Q24815853)

4 July 2017

title

Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort (English)

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4 July 2017

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4 July 2017

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Michael John Gill

object named as

M John Gill

6

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author name string

Meriet Mikhail

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4 July 2017

Bin Wang

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4 July 2017

Brenda Beckthold

4

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4 July 2017

Nitin K Saksena

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4 July 2017

language of work or name

English

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publication date

29 June 2005

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4 July 2017

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4 July 2017

volume

2

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4 July 2017

issue

1

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page(s)

41

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HLA B*5701 is highly associated with restriction of virus replication in a subgroup of HIV-infected long term nonprogressors

4 July 2017

cites work

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 April 2017

1 reference

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Structural constraints on RNA virus evolution

7 April 2017

1 reference

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MODELTEST: testing the model of DNA substitution

7 April 2017

1 reference

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Statistical methods for detecting molecular adaptation

7 April 2017

1 reference

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Vigorous HIV-1-specific CD4+ T cell responses associated with control of viremia

7 April 2017

1 reference

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Genomic structure of an attenuated quasi species of HIV-1 from a blood transfusion donor and recipients

7 April 2017

1 reference

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7 April 2017

How clonal are bacteria?

1 reference

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First demonstration of a lack of viral sequence evolution in a nonprogressor, defining replication-incompetent HIV-1 infection

7 April 2017

1 reference

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Advantage of rare HLA supertype in HIV disease progression

28 September 2017

1 reference

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HIV mutagenesis and the evolution of antiretroviral drug resistance

28 September 2017

1 reference

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Comprehensive analyses of a unique HIV-1-infected nonprogressor reveal a complex association of immunobiological mechanisms in the context of replication-incompetent infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation

28 September 2017

1 reference

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Evaluation of methods for detecting recombination from DNA sequences: computer simulations

28 September 2017

1 reference

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An examination of signs of disease progression in survivors of the Sydney Blood Bank Cohort (SBBC).

28 September 2017

1 reference

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Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Differential narrow focusing of immunodominant human immunodeficiency virus gag-specific cytotoxic T-lymphocyte responses in infected African and caucasoid adults and children.

28 September 2017

1 reference

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Frequent detection of escape from cytotoxic T-lymphocyte recognition in perinatal human immunodeficiency virus (HIV) type 1 transmission: the ariel project for the prevention of transmission of HIV from mother to infant.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Transmission of human immunodeficiency virus through blood transfusion: the use of lookback and traceback approaches to optimize recipient identification in a regional population

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Functional characterization of human immunodeficiency virus type 1 nef genes in patients with divergent rates of disease progression.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Limited heterogeneity of HIV type 1 in infected mothers correlates with lack of vertical transmission

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

RNA and DNA sequence analysis of the nef gene of HIV type 1 strains from the first HIV type 1-infected long-term nonprogressing mother-child pair

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Full-Length HIV Type 1 Genome Analysis Showing Evidence for HIV Type 1 Transmission from a Nonprogressor to Two Recipients Who Progressed to AIDS

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Error thresholds and the constraints to RNA virus evolution

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Analysis of transition from long-term nonprogressive to progressive infection identifies sequences that may attenuate HIV type 1.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Early changes in quasispecies repertoire in HIV-infected infants: correlation with disease progression

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Estimation of the transition/transversion rate bias and species sampling.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Gene Defects Clustered at the C-Terminus of the vpr Gene of HIV-1 in Long-Term Nonprogressing Mother and Child Pair:In VivoEvolution of vpr Quasispecies in Blood and Plasma

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Cytotoxic T lymphocytes in asymptomatic long-term nonprogressing HIV-1 infection. Breadth and specificity of the response and relation to in vivo viral quasispecies in a person with prolonged infection and low viral load.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Influence of combinations of human major histocompatibility complex genes on the course of HIV-1 infection

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1190217

Detecting recombination from gene trees

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15985187

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recombination and the molecular clock

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15985187

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1742-4690-2-41

1 reference

Dimensions Publication ID

4 July 2017

0 references

1 reference

4 July 2017

1 reference