Exploration of phylogenetic data using a global sequence analysis method (Q24816232)

5 July 2017

Exploration of phylogenetic data using a global sequence analysis method (English)

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5 July 2017

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3

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5 July 2017

Charles Chapus

1

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5 July 2017

Christine Dufraigne

2

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5 July 2017

Alain Giron

4

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5 July 2017

Bernard Fertil

5

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5 July 2017

Patrick Deschavanne

6

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5 July 2017

language of work or name

English

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publication date

9 November 2005

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5 July 2017

BMC Evolutionary Biology

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5 July 2017

5

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5 July 2017

63

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https://scigraph.springernature.com/pub.10.1186/1471-2148-5-63

5 July 2017

1

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exact match

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-5-63

cites work

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

7 April 2017

1 reference

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

The process of genome shrinkage in the obligate symbiont Buchnera aphidicola

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Genome trees constructed using five different approaches suggest new major bacterial clades

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

The neighbor-joining method: a new method for reconstructing phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Evolutionary trees from DNA sequences: A maximum likelihood approach

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

7 April 2017

Mitochondrial evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Genome-scale approaches to resolving incongruence in molecular phylogenies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Using CLUSTAL for multiple sequence alignments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

The spectrum of genomic signatures: from dinucleotides to chaos game representation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Biased biological functions of horizontally transferred genes in prokaryotic genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Evolutionary implications of microbial genome tetranucleotide frequency biases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

A genomic schism in birds revealed by phylogenetic analysis of DNA strings

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Phylogenetic inferences from molecular sequences: review and critique

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

The SYSTERS protein sequence cluster set.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

The genomic tree as revealed from whole proteome comparisons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Molecules, morphology, fossils, and the relationship of angiosperms and Gnetales

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Compositional biases of bacterial genomes and evolutionary implications

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

A stepwise algorithm for finding minimum evolution trees

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Phylogenetic analysis of green plant rbcL sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Dinucleotide relative abundance extremes: a genomic signature

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Chaos game representation of gene structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Evidence that eukaryotes and eocyte prokaryotes are immediate relatives

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

A comprehensive vertebrate phylogeny using vector representations of protein sequences from whole genomes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Measure representation and multifractal analysis of complete genomes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Quartet-based phylogenetic inference: improvements and limits

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Bacterial DNA strand compositional asymmetry.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

Recombination activating gene 1 (Rag1) in zebrafish and shark.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310607

The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal?

28 November 2018

1 reference

12 December 2020

Cirripede phylogeny using a novel approach: molecular morphometrics

1 reference

12 December 2020

SHOT: a web server for the construction of genome phylogenies

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

The origin and early evolution of plants on land

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/37918

15 July 2023

Identifiers

DOI

10.1186/1471-2148-5-63

1 reference

Dimensions Publication ID

5 July 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-5-63

PMCID

1310607

1 reference

5 July 2017

1 reference