Discovering semantic features in the literature: a foundation for building functional associations (Q25257020)

22 June 2017

Discovering semantic features in the literature: a foundation for building functional associations (English)

1 reference

22 June 2017

1

Monica Chagoyen

1 reference

22 June 2017

Pedro Carmona-Saez

2

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Hagit Shatkay

series ordinal

3

object named as

Hagit Shatkay

1 reference

22 June 2017

Jose M Carazo

4

1 reference

PubMed ID

16438716

22 June 2017

Alberto Pascual-Montano

series ordinal

5

1 reference

PubMed ID

16438716

22 June 2017

language of work or name

English

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publication date

26 January 2006

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22 June 2017

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22 June 2017

7

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22 June 2017

1

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page(s)

41

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https://scigraph.springernature.com/pub.10.1186/1471-2105-7-41

22 June 2017

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cites work

Theme discovery from gene lists for identification and viewing of multiple functional groups

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Entrez Gene: gene-centered information at NCBI

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

TXTGate: profiling gene groups with text-based information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Mining microarray expression data by literature profiling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

KEGG: kyoto encyclopedia of genes and genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Learning the parts of objects by non-negative matrix factorization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

A database for post-genome analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Gene clustering by latent semantic indexing of MEDLINE abstracts.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

From paragraph to graph: latent semantic analysis for information visualization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Metagenes and molecular pattern discovery using matrix factorization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Mining the biomedical literature in the genomic era: an overview

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Subsystem identification through dimensionality reduction of large-scale gene expression data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Free-text medical document retrieval via phrase-based vector space model.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Using text analysis to identify functionally coherent gene groups

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

A literature network of human genes for high-throughput analysis of gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Textquest: document clustering of Medline abstracts for concept discovery in molecular biology.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Nonsmooth nonnegative matrix factorization (nsNMF).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Combining NLP and probabilistic categorisation for document and term selection for Swiss-Prot medical annotation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Evaluation of the vector space representation in text-based gene clustering.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Genes, themes and microarrays: using information retrieval for large-scale gene analysis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

High-throughput functional annotation of novel gene products using document clustering.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1386711

Mining functional information associated with expression arrays

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16438716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16438716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-41

1 reference

journals/bmcbi/ChagoyenCSCP06

22 June 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

0 references

1 reference

PubMed ID

16438716