Sequence effects of aminofluorene-modified DNA duplexes: thermodynamic and circular dichroism properties (Q25257812)

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16 January 2020

title

Sequence effects of aminofluorene-modified DNA duplexes: thermodynamic and circular dichroism properties (English)

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16 January 2020

4

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16 January 2020

author name string

Srinivasa Rao Meneni

1

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16 January 2020

Rhijuta D'Mello

2

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16 January 2020

Gregory Norigian

3

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16 January 2020

Lan Gao

5

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16 January 2020

M Paul Chiarelli

6

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16 January 2020

Bongsup P Cho

7

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16 January 2020

language of work or name

English

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publication date

30 January 2006

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16 January 2020

published in

Nucleic Acids Research

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16 January 2020

volume

34

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16 January 2020

issue

2

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16 January 2020

page(s)

755-763

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Site-specific incorporation of N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) into oligonucleotides using modified 'ultra-mild' DNA synthesis

16 January 2020

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Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex: evidence for a major syn conformation

7 April 2017

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Crystal structures of 2-acetylaminofluorene and 2-aminofluorene in complex with T7 DNA polymerase reveal mechanisms of mutagenesis

28 September 2017

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28 September 2017

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Site-specifically located 8-amino-2'-deoxyguanosine: thermodynamic stability and mutagenic properties in Escherichia coli

28 September 2017

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Factors that influence the mutagenic patterns of DNA adducts from chemical carcinogens

28 September 2017

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Differential destabilization of the DNA oligonucleotide double helix by a T.G mismatch, 3,N(4)-ethenocytosine, 3,N(4)-ethanocytosine, or an 8-(hydroxymethyl)-3,N(4)-ethenocytosine adduct incorporated into the same sequence contexts

28 September 2017

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Nucleic acid sequence and repair: role of adduct, neighbor bases and enzyme specificity

28 September 2017

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Thermodynamics of internal C.T mismatches in DNA.

28 September 2017

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Induced circular dichroism of benzo[a]pyrene-7,8-dihydrodiol 9,10-epoxide stereoisomers covalently bound to deoxyribooligonucleotides used to probe equilibrium distribution between groove binding and intercalative adduct conformations

28 September 2017

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Genetic toxicity of 2-acetylaminofluorene, 2-aminofluorene and some of their metabolites and model metabolites

28 September 2017

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Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

28 September 2017

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A Circular Dichroism Study on the Conformation of d(CGT) Modified with N-acetyl-2-aminofluorene or 2-aminofluorene

28 September 2017

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Conformational changes induced in DNA by in vitro reaction with N-hydroxy-N-2-aminofluorene

28 September 2017

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28 September 2017

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15-mer DNA duplexes containing an abasic site are thermodynamically more stable with adjacent purines than with pyrimidines

28 September 2017

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Sequence-dependent repair of synthetic AP sites in 15-mer and 35-mer oligonucleotides: role of thermodynamic stability imposed by neighbor bases

31 May 2018

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Formation and persistence of DNA adducts during and after a long-term administration of 2-nitrofluorene

31 May 2018

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A single cyclic p-benzoquinone adduct can destabilize a DNA oligonucleotide duplex

31 May 2018

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New syntheses of N-(guanosin-8-yl)-4-aminobiphenyl and its 5'-monophosphate

31 May 2018

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An optical study of the conformation of the aminofluorene-DNA complex.

31 May 2018

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Mutagenesis studies with four stereoisomeric N2-dG benzo[a]pyrene adducts in the identical 5'-CGC sequence used in NMR studies: G->T mutations dominate in each case

31 May 2018

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Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase.

28 November 2018

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28 November 2018

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Influence of flanking sequence context on the mutagenicity of acetylaminofluorene-derived DNA adducts in mammalian cells

28 November 2018

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Correlation between sequence-dependent glycosylase repair and the thermal stability of oligonucleotide duplexes containing 1, N6-ethenoadenine

28 November 2018

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NMR structural studies of a 15-mer DNA duplex from a ras protooncogene modified with the carcinogen 2-aminofluorene: conformational heterogeneity.

28 November 2018

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A spectroscopic study of the conformation of poly d(G-C).poly d(G-C) modified with the carcinogenic 2-aminofluorene

28 November 2018

1 reference

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Synthesis, characterization, and solution properties of ras sequences modified by arylamine carcinogens at the first base of codon 61

28 November 2018

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12 December 2020

NMR structural studies of a 15-mer DNA sequence from a ras protooncogene, modified at the first base of codon 61 with the carcinogen 4-aminobiphenyl

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12 December 2020

Rate of incision of N-acetyl-2-aminofluorene and N-2-aminofluorene adducts by UvrABC nuclease is adduct- and sequence-specific: comparison of the rates of UvrABC nuclease incision and protein-DNA complex formation

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12 December 2020

Sequencing oligonucleotides with blocked termini using exonuclease digestion and electrospray mass spectrometry

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12 December 2020

Nuclear magnetic resonance solution structures of covalent aromatic amine-DNA adducts and their mutagenic relevance

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12 December 2020

Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence

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12 December 2020

Effect of mismatched complementary strands and 5'-change in sequence context on the thermodynamics and structure of benzo[a]pyrene-modified oligonucleotides

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12 December 2020

Mutagenic specificity of (acetylamino)fluorene-derived DNA adducts in mammalian cells

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12 December 2020

The impact of an exocyclic cytosine adduct on DNA duplex properties: significant thermodynamic consequences despite modest lesion-induced structural alterations

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12 December 2020

Probing the conformational heterogeneity of the acetylaminofluorene-modified 2'-deoxyguanosine and DNA by 19F NMR spectroscopy

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12 December 2020

DNA quality control by conformational readout on the undamaged strand of the double helix

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKJ480

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16449208%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

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16 January 2020

PubMed publication ID

16449208

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