Nonstructural Proteins Are Preferential Positive Selection Targets in Zika Virus and Related Flaviviruses (Q26762388)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Diego Forni

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Rachele Cagliani

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

3

Mario Clerici

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

PLoS Neglected Tropical Diseases

13 June 2020

language of work or name

English

0 references

publication date

2 September 2016

0 references

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

e0004978

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

13 June 2020

copyright license

start time

2 September 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

on focus list of Wikimedia project

WikiProject Zika Corpus

0 references

cites work

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Evolutionary processes among sylvatic dengue type 2 viruses

7 April 2017

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Antibodies against West Nile Virus Nonstructural Protein NS1 Prevent Lethal Infection through Fc Receptor-Dependent and -Independent Mechanisms

7 April 2017

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Inhibition of Alpha/Beta Interferon Signaling by the NS4B Protein of Flaviviruses

7 April 2017

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7 April 2017

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Genetic interaction of flavivirus nonstructural proteins NS1 and NS4A as a determinant of replicase function.

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

7 April 2017

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Dengue Virus Non-structural Protein 1 Modulates Infectious Particle Production via Interaction with the Structural Proteins

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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High circulating levels of the dengue virus nonstructural protein NS1 early in dengue illness correlate with the development of dengue hemorrhagic fever

7 April 2017

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7 April 2017

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28 September 2017

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Activation of TLR2 and TLR6 by Dengue NS1 Protein and Its Implications in the Immunopathogenesis of Dengue Virus Infection

28 September 2017

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28 September 2017

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Gene-wide identification of episodic selection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Characterization of dengue virus NS4A and NS4B protein interaction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

The C-terminal 50 amino acid residues of dengue NS3 protein are important for NS3-NS5 interaction and viral replication

28 September 2017

1 reference

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Two distinct sets of NS2A molecules are responsible for dengue virus RNA synthesis and virion assembly

28 September 2017

1 reference

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28 September 2017

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A positively selected mutation in the WNV 2K peptide confers resistance to superinfection exclusion in vivo

28 September 2017

1 reference

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Comparison of genotypes I and III in Japanese encephalitis virus reveals distinct differences in their genetic and host diversity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Abrogation of TLR3 inhibition by discrete amino acid changes in the C-terminal half of the West Nile virus NS1 protein

28 September 2017

1 reference

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Elucidating the role of T cells in protection against and pathogenesis of dengue virus infections

28 September 2017

1 reference

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Serotype-specific differences in dengue virus non-structural protein 5 nuclear localization

28 September 2017

1 reference

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28 September 2017

1 reference

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The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

FUBAR: a fast, unconstrained bayesian approximation for inferring selection

28 September 2017

1 reference

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Protective immunity to Japanese encephalitis virus associated with anti-NS1 antibodies in a mouse model

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Evidence for a genetic and physical interaction between nonstructural proteins NS1 and NS4B that modulates replication of West Nile virus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Recombination and positive selection identified in complete genome sequences of Japanese encephalitis virus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

ViPR: an open bioinformatics database and analysis resource for virology research.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Dengue--quo tu et quo vadis?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

A cross-protective mAb recognizes a novel epitope within the flavivirus NS1 protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Estimating maximum likelihood phylogenies with PhyML.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Molecular evolution of dengue 2 virus in Puerto Rico: positive selection in the viral envelope accompanies clade reintroduction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Subcellular localization and membrane topology of the Dengue virus type 2 Non-structural protein 4B.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Antigenic structure of flavivirus proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Selection-driven evolution of emergent dengue virus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

Phylogenetic evidence for adaptive evolution of dengue viruses in nature.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5010288

The Fc portion of antibody to yellow fever virus NS1 is a determinant of protection against YF encephalitis in mice

28 September 2017

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Protection against 17D yellow fever encephalitis in mice by passive transfer of monoclonal antibodies to the nonstructural glycoprotein gp48 and by active immunization with gp48.

28 September 2017

1 reference

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Improving the performance of positive selection inference by filtering unreliable alignment regions.

28 September 2017

1 reference

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Automated phylogenetic detection of recombination using a genetic algorithm.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0004978

Recco: recombination analysis using cost optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0004978

Arguments for live flavivirus vaccines

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0004978

Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27588756

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PNTD.0004978

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27588756%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

2 references