Expanding Omics Resources for Improvement of Soybean Seed Composition Traits (Q26774614)

6

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Rupesh K. Deshmukh

object named as

Rupesh K Deshmukh

4

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Henry T Nguyen

7

object named as

Henry T Nguyen

0 references

author name string

Juhi Chaudhary

1

0 references

Humira Sonah

3

0 references

Tri D Vuong

Frontiers in Plant Science

5

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language of work or name

English

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publication date

2015

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published in

1 reference

Precision genome engineering and agriculture: opportunities and regulatory challenges

volume

6

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page(s)

1021

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cites work

1 reference

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The advantages and limitations of trait analysis with GWAS: a review

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Analysis of proteome profile in germinating soybean seed, and its comparison with rice showing the styles of reserves mobilization in different crops

7 April 2017

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Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases

7 April 2017

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7 April 2017

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Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

7 April 2017

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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome

7 April 2017

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7 April 2017

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Rare variants create synthetic genome-wide associations

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7 April 2017

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SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

7 April 2017

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Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis

9 May 2017

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Agricultural practices altered soybean seed protein, oil, fatty acids, sugars, and minerals in the Midsouth USA.

28 September 2017

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A systems biology approach toward understanding seed composition in soybean

28 September 2017

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Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean.

28 September 2017

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Development, validation and genetic analysis of a large soybean SNP genotyping array

28 September 2017

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The CRISPR/Cas9 system for plant genome editing and beyond

28 September 2017

1 reference

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Gel-free proteomic analysis of soybean root proteins affected by calcium under flooding stress

28 September 2017

1 reference

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Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds.

28 September 2017

1 reference

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Applying association mapping and genomic selection to the dissection of key traits in elite European wheat

28 September 2017

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Genome re-sequencing of semi-wild soybean reveals a complex Soja population structure and deep introgression.

28 September 2017

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Genotyping by sequencing for genomic prediction in a soybean breeding population

28 September 2017

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Expression quantitative trait loci infer the regulation of isoflavone accumulation in soybean (Glycine max L. Merr.) seed

28 September 2017

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Genomic selection: genome-wide prediction in plant improvement

28 September 2017

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Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos

28 September 2017

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Screening and identification of soybean seed-specific genes by using integrated bioinformatics of digital differential display, microarray, and RNA-seq data.

28 September 2017

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Integrating omic approaches for abiotic stress tolerance in soybean

28 September 2017

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Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules

28 September 2017

1 reference

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Improved soybean oil quality by targeted mutagenesis of the fatty acid desaturase 2 gene family

28 September 2017

1 reference

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Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content

28 September 2017

1 reference

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Targeted genome editing of sweet orange using Cas9/sgRNA

28 September 2017

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TraitCapture: genomic and environment modelling of plant phenomic data.

28 September 2017

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SoyFN: a knowledge database of soybean functional networks.

28 September 2017

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A genome-wide association study of seed protein and oil content in soybean.

28 September 2017

1 reference

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Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties

28 September 2017

1 reference

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Cross-validation in association mapping and its relevance for the estimation of QTL parameters of complex traits

28 September 2017

1 reference

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Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes

28 September 2017

1 reference

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Assessment of genetically modified soybean in relation to natural variation in the soybean seed metabolome

28 September 2017

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Field high-throughput phenotyping: the new crop breeding frontier.

28 September 2017

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Molecular characterization of Glycine max squalene synthase genes in seed phytosterol biosynthesis

28 September 2017

1 reference

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Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice

28 September 2017

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Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing

28 September 2017

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Potential assessment of genome-wide association study and genomic selection in Japanese pear Pyrus pyrifolia

28 September 2017

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Genome-wide expression analysis of soybean MADS genes showing potential function in the seed development.

28 September 2017

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Using RNA-Seq to profile soybean seed development from fertilization to maturity

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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SoyProDB: A database for the identification of soybean seed proteins

28 September 2017

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Development and evaluation of SoySNP50K, a high-density genotyping array for soybean

28 September 2017

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28 September 2017

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Genomic differences between cultivated soybean, G. max and its wild relative G. soja

28 September 2017

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Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

28 September 2017

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Can genomics boost productivity of orphan crops?

28 September 2017

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NanoUPLC-MSE proteomic data assessment of soybean seeds using the Uniprot database

28 September 2017

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Sequence mining and transcript profiling to explore differentially expressed genes associated with lipid biosynthesis during soybean seed development

28 September 2017

1 reference

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Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

28 September 2017

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Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean

28 September 2017

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Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics

28 September 2017

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Genome-wide association studies in plants: the missing heritability is in the field

28 September 2017

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New insights on proteomics of transgenic soybean seeds: evaluation of differential expressions of enzymes and proteins

28 September 2017

1 reference

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Combined analysis of transcriptome and metabolite data reveals extensive differences between black and brown nearly-isogenic soybean (Glycine max) seed coats enabling the identification of pigment isogenes

28 September 2017

1 reference

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Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs

28 September 2017

1 reference

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Genomic value prediction for quantitative traits under the epistatic model

28 September 2017

1 reference

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Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA)

28 September 2017

1 reference

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Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

28 September 2017

1 reference

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Mutant alleles of FAD2-1A and FAD2-1Bcombine to produce soybeans with the high oleic acid seed oil trait

28 September 2017

1 reference

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Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers.

28 September 2017

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Conditions under which genome-wide association studies will be positively misleading.

28 September 2017

1 reference

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Flux of transcript patterns during soybean seed development

28 September 2017

1 reference

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Ionomics: The functional genomics of elements

28 September 2017

1 reference

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SoyBase, the USDA-ARS soybean genetics and genomics database

28 September 2017

1 reference

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Soybean oil: genetic approaches for modification of functionality and total content

28 September 2017

1 reference

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New sources of soybean seed meal and oil composition traits identified through TILLING

28 September 2017

1 reference

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Soybean proteome database: a data resource for plant differential omics

28 September 2017

1 reference

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Metabolomics for functional genomics, systems biology, and biotechnology

28 September 2017

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SoyXpress: a database for exploring the soybean transcriptome

28 September 2017

1 reference

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Ionomics and the study of the plant ionome.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4657443

Specific elements of the glyoxylate pathway play a significant role in the functional transition of the soybean cotyledon during seedling development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4657443

Plant metabolomics: potential for practical operation

28 September 2017

1 reference

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A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database.

28 September 2017

1 reference

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High-throughput peptide mass fingerprinting of soybean seed proteins: automated workflow and utility of UniGene expressed sequence tag databases for protein identification

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4657443

SGMD: the Soybean Genomics and Microarray Database

28 September 2017

1 reference

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The genetic architecture of seed composition in soybean is refined by genome-wide association scans across multiple populations

28 September 2017

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Soybean seed proteome rebalancing

31 May 2018

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A reference genome for common bean and genome-wide analysis of dual domestications

31 May 2018

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Comparative metabolomic study of transgenic versus conventional soybean using capillary electrophoresis-time-of-flight mass spectrometry

31 May 2018

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Seed quality QTL in a prominent soybean population

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4657443

Metabolic engineering to increase isoflavone biosynthesis in soybean seed

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4657443

The impact of genomics on the study of natural variation in Arabidopsis

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4657443

In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed

31 May 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Global gene expression profiles in developing soybean seeds.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Legumes as a model plant family. Genomics for food and feed report of the Cross-Legume Advances Through Genomics Conference

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Metabolically engineered oilseed crops with enhanced seed tocopherol

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Expression of Umbelopsis ramanniana DGAT2A in seed increases oil in soybean.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Seed metabolomic study reveals significant metabolite variations and correlations among different soybean cultivars.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Improving metallomics information related to transgenic and non-transgenic soybean seeds using 2D-HPLC-ICP-MS and ESI-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

SCNProDB: A database for the identification of soybean cyst nematode proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Silencing of soybean seed storage proteins results in a rebalanced protein composition preserving seed protein content without major collateral changes in the metabolome and transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Genomic selection of seed weight based on low-density SCAR markers in soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Multi-environment mapping and meta-analysis of 100-seed weight in soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

RNAi trigger fragment truncation attenuates soybean FAD2‐1 transcript suppression and yields intermediate oil phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

A proposed framework for the description of plant metabolomics experiments and their results

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

SoyMetDB: The soybean metabolome database

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Metabolic engineering of soybean affords improved phytosterol seed traits

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean

21 January 2018

1 reference

12 December 2020

A novel FAD2-1 A allele in a soybean plant introduction offers an alternate means to produce soybean seed oil with 85% oleic acid content

1 reference

12 December 2020

Transcriptome analysis reveals a critical role of CHS7 and CHS8 genes for isoflavonoid synthesis in soybean seeds

1 reference

12 December 2020

Metabolomics for unknown plant metabolites

1 reference

12 December 2020

QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population

1 reference

12 December 2020

Comparative analysis of soybean plasma membrane proteins under osmotic stress using gel-based and LC MS/MS-based proteomics approaches

1 reference

12 December 2020

A comparative study of element concentrations and binding in transgenic and non-transgenic soybean seeds

1 reference

12 December 2020

Ribozyme termination of RNA transcripts down-regulate seed fatty acid genes in transgenic soybean

1 reference

12 December 2020

Combinations of mutant FAD2 and FAD3 genes to produce high oleic acid and low linolenic acid soybean oil

1 reference

12 December 2020

Classification of distinct seed carbohydrate profiles in soybean

1 reference

12 December 2020

Genetic control of soybean seed oil: I. QTL and genes associated with seed oil concentration in RIL populations derived from crossing moderately high-oil parents

1 reference

12 December 2020

Ionome of soybean seed affected by previous cropping with mycorrhizal plant and manure application

1 reference

12 December 2020

Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

7 January 2021

Translational Genomics in Agriculture: Some Examples in Grain Legumes

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

7 January 2021

Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSR_1.0) in Soybean

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

7 January 2021

Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

7 January 2021

Legume Genomics: From Genomic Resources to Molecular Breeding

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2015.01021

7 January 2021

Identifiers

DOI

10.3389/FPLS.2015.01021

1 reference

1 reference

1 reference

PubMed publication ID

26635846

1 reference