Interrogating the major histocompatibility complex with high-throughput genomics (Q26822705)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22976473%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Interrogating the major histocompatibility complex with high-throughput genomics (English)

2 references

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13 February 2020

1 reference

2

1 reference

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13 February 2020

author name string

Paul I W de Bakker

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22976473%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

language of work or name

1 reference

12 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22976473%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

published in

Human Molecular Genetics

2 references

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13 February 2020

volume

21

2 references

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13 February 2020

issue

R1

2 references

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13 February 2020

page(s)

R29-36

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22976473%20AND%20SRC:MED&resulttype=core&format=json

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis

13 February 2020

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7 April 2017

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Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis

7 April 2017

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Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project

7 April 2017

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Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history

7 April 2017

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Structural basis for HLA-DQ2-mediated presentation of gluten epitopes in celiac disease

7 April 2017

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Principal components analysis corrects for stratification in genome-wide association studies

7 April 2017

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The shared epitope hypothesis. An approach to understanding the molecular genetics of susceptibility to rheumatoid arthritis

7 April 2017

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The major genetic determinants of HIV-1 control affect HLA class I peptide presentation

7 April 2017

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HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin

7 April 2017

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Genotype imputation for genome-wide association studies

7 April 2017

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A whole-genome association study of major determinants for host control of HIV-1

7 April 2017

1 reference

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The association between complement component 2/complement factor B polymorphisms and age-related macular degeneration: a HuGE review and meta-analysis.

7 April 2017

1 reference

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Fine-mapping classical HLA variation associated with durable host control of HIV-1 infection in African Americans

28 September 2017

1 reference

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Exome sequencing and the genetic basis of complex traits

28 September 2017

1 reference

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High-throughput, high-fidelity HLA genotyping with deep sequencing

28 September 2017

1 reference

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Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles

28 September 2017

1 reference

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Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis

28 September 2017

1 reference

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De novo assembly and genotyping of variants using colored de Bruijn graphs

28 September 2017

1 reference

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Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Comparing strategies to fine-map the association of common SNPs at chromosome 9p21 with type 2 diabetes and myocardial infarction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Differential microRNA regulation of HLA-C expression and its association with HIV control

28 September 2017

1 reference

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Electrostatic modifications of the human leukocyte antigen-DR P9 peptide-binding pocket and susceptibility to primary sclerosing cholangitis

28 September 2017

1 reference

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A multi-site study using high-resolution HLA genotyping by next generation sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Next-generation sequencing for HLA typing of class I loci

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Accurate HLA type inference using a weighted similarity graph.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

28 September 2017

The IMGT/HLA database

1 reference

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Shared molecular amino acid signature in the HLA-DR peptide binding pocket predisposes to both autoimmune diabetes and thyroiditis.

28 September 2017

1 reference

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HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C.

28 September 2017

1 reference

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Mapping of multiple susceptibility variants within the MHC region for 7 immune-mediated diseases

28 September 2017

1 reference

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Validating, augmenting and refining genome-wide association signals

28 September 2017

1 reference

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An extension to a statistical approach for family based association studies provides insights into genetic risk factors for multiple sclerosis in the HLA-DRB1 gene

28 September 2017

1 reference

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Effective detection of human leukocyte antigen risk alleles in celiac disease using tag single nucleotide polymorphisms

28 September 2017

1 reference

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Defining the role of the MHC in autoimmunity: a review and pooled analysis

28 September 2017

1 reference

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Human MHC architecture and evolution: implications for disease association studies

28 September 2017

1 reference

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A statistical method for predicting classical HLA alleles from SNP data

28 September 2017

1 reference

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A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC.

28 September 2017

1 reference

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MHC class II proteins and disease: a structural perspective

28 September 2017

1 reference

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A high-density screen for linkage in multiple sclerosis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Gene map of the extended human MHC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Complete MHC haplotype sequencing for common disease gene mapping

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

A correlation between the relative predisposition of MHC class II alleles to type 1 diabetes and the structure of their proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

The genetic basis for the association of the 8.1 ancestral haplotype (A1, B8, DR3) with multiple immunopathological diseases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Genetics of HLA disease association

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

The major histocompatibility complex--genetics and biology. (First of three parts).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

HLA type inference via haplotypes identical by descent

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

HLA*IMP--an integrated framework for imputing classical HLA alleles from SNP genotypes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Regression mapping of association between the human leukocyte antigen region and Graves disease

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

HLA-DQ beta gene contributes to susceptibility and resistance to insulin-dependent diabetes mellitus

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir

31 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FHMG%2FDDS384

Cost-effective HLA typing with tagging SNPs predicts celiac disease risk haplotypes in the Finnish, Hungarian, and Italian populations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FHMG%2FDDS384

Arginine at position 74 of the HLA-DR beta1 chain is associated with Graves' disease

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FHMG%2FDDS384

New reservoirs of HLA alleles: pools of rare variants enhance immune defense

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459647

Human leukocyte antigen-DRB1 position 11 residues are a common protective marker for sarcoidosis

28 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22976473

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/HMG/DDS384

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22976473%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22976473%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

2 references